RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ZNF652Q9Y2D9 606 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 ZC3H4Q9UPT8 1303 aaKnown RBP10.07□□□□□ -0.8
CUX1-219ENST00000606749 GLTPD2A6NH11 291 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 APLP1P51693 650 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 DDX10Q13206 875 aaKnown RBP10.07□□□□□ -0.8
CUX1-219ENST00000606749 HLFQ16534 295 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 STYK1Q6J9G0 422 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 TPTE2Q6XPS3 522 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 C16orf71Q8IYS4 520 aaPredicted RBP10.07□□□□□ -0.8
CUX1-219ENST00000606749 CNKSR1Q969H4 720 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 MASTLQ96GX5 879 aa10.07□□□□□ -0.8
CUX1-219ENST00000606749 ZNF219Q9P2Y4 722 aaPredicted RBP10.07□□□□□ -0.8
CUX1-219ENST00000606749 NIP7Q9Y221 180 aaKnown RBP eCLIP10.07□□□□□ -0.8
CUX1-219ENST00000606749 ANKRD31Q8N7Z5 1873 aa10.06□□□□□ -0.8
CUX1-219ENST00000606749 SCN7AQ01118 1682 aa10.06□□□□□ -0.8
CUX1-219ENST00000606749 KLRG2A4D1S0 409 aaPredicted RBP10.06□□□□□ -0.8
CUX1-219ENST00000606749 NGEFQ8N5V2 710 aa10.06□□□□□ -0.8
CUX1-219ENST00000606749 DNAJC5GQ8N7S2 189 aa10.06□□□□□ -0.8
CUX1-219ENST00000606749 RRP7AQ9Y3A4 280 aaKnown RBP10.06□□□□□ -0.8
CUX1-219ENST00000606749 DLEC1Q9Y238 1755 aa10.06□□□□□ -0.8
CUX1-219ENST00000606749 MAPK8IP3Q9UPT6 1336 aa10.06□□□□□ -0.8
CUX1-219ENST00000606749 ERVV-1B6SEH8 477 aa10.05□□□□□ -0.8
CUX1-219ENST00000606749 VEGFAP15692 232 aaPredicted RBP10.05□□□□□ -0.8
CUX1-219ENST00000606749 RIPK4P57078 832 aa10.05□□□□□ -0.8
CUX1-219ENST00000606749 FSTL1Q12841 308 aa10.05□□□□□ -0.8
CUX1-219ENST00000606749 PRPF40BQ6NWY9 871 aaKnown RBP10.05□□□□□ -0.8
CUX1-219ENST00000606749 C7orf43Q8WVR3 580 aa10.05□□□□□ -0.8
CUX1-219ENST00000606749 DLG5Q8TDM6 1919 aa10.05□□□□□ -0.8
CUX1-219ENST00000606749 FAM177BA6PVY3 158 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 MYL6BP14649 208 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 NPR1P16066 1061 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 TMPOP42166 694 aaKnown RBP10.04□□□□□ -0.8
CUX1-219ENST00000606749 ERFEQ4G0M1 354 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 DPY19L2Q6NUT2 758 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 TTLL7Q6ZT98 887 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 TSPYL4Q9UJ04 414 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 MAP3K15Q6ZN16 1313 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 LTBP3Q9NS15 1303 aa10.04□□□□□ -0.8
CUX1-219ENST00000606749 BCORQ6W2J9 1755 aa10.03□□□□□ -0.8
CUX1-219ENST00000606749 SLX4Q8IY92 1834 aa10.03□□□□□ -0.8
CUX1-219ENST00000606749 POTECB2RU33 542 aa10.03□□□□□ -0.8
CUX1-219ENST00000606749 GTF2E1P29083 439 aaPredicted RBP10.03□□□□□ -0.8
CUX1-219ENST00000606749 SOGA3Q5TF21 947 aa10.03□□□□□ -0.8
CUX1-219ENST00000606749 TAOK3Q9H2K8 898 aa10.03□□□□□ -0.8
CUX1-219ENST00000606749 BABAM1Q9NWV8 329 aa10.03□□□□□ -0.8
CUX1-219ENST00000606749 CCDC88AQ3V6T2 1871 aa10.02□□□□□ -0.8
CUX1-219ENST00000606749 KIF6Q6ZMV9 814 aa10.02□□□□□ -0.81
CUX1-219ENST00000606749 SMC1BQ8NDV3 1235 aa10.02□□□□□ -0.81
CUX1-219ENST00000606749 NYXQ9GZU5 481 aa10.02□□□□□ -0.81
CUX1-219ENST00000606749 MYBBP1AQ9BQG0 1328 aaKnown RBP10.02□□□□□ -0.81
CUX1-219ENST00000606749 COL11A2P13942 1736 aaPredicted RBP10.02□□□□□ -0.81
CUX1-219ENST00000606749 EIF2S2P20042 333 aaKnown RBP10.01□□□□□ -0.81
CUX1-219ENST00000606749 ALDH1B1P30837 517 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 HTRA3P83110 453 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 LMOD3Q0VAK6 560 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 PDIA6Q15084 440 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 NEUROD2Q15784 382 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 CCDC93Q567U6 631 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 SUSD4Q5VX71 490 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 GIGYF2Q6Y7W6 1299 aaKnown RBP10.01□□□□□ -0.81
CUX1-219ENST00000606749 LRP10Q7Z4F1 713 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 NUTM1Q86Y26 1132 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 CCDC146Q8IYE0 955 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 ZNF34Q8IZ26 560 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 ZBTB3Q9H5J0 574 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 FER1L6Q2WGJ9 1857 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 ERBB4Q15303 1308 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 KDM3BQ7LBC6 1761 aa10.01□□□□□ -0.81
CUX1-219ENST00000606749 CHL1O00533 1208 aa10□□□□□ -0.81
CUX1-219ENST00000606749 DDNO94850 711 aaPredicted RBP10□□□□□ -0.81
CUX1-219ENST00000606749 GPTP24298 496 aa10□□□□□ -0.81
CUX1-219ENST00000606749 CRY2Q49AN0 593 aa10□□□□□ -0.81
CUX1-219ENST00000606749 OLFM4Q6UX06 510 aa10□□□□□ -0.81
CUX1-219ENST00000606749 RTKN2Q8IZC4 609 aa10□□□□□ -0.81
CUX1-219ENST00000606749 RUNDC1Q96C34 613 aa10□□□□□ -0.81
CUX1-219ENST00000606749 ADAMTS8Q9UP79 889 aa10□□□□□ -0.81
CUX1-219ENST00000606749 UBN2Q6ZU65 1347 aa10□□□□□ -0.81
CUX1-219ENST00000606749 TNRC6CQ9HCJ0 1690 aaKnown RBP9.99□□□□□ -0.81
CUX1-219ENST00000606749 FKBP4Q02790 459 aaKnown RBP eCLIP9.99□□□□□ -0.81
CUX1-219ENST00000606749 PROSER3Q2NL68 480 aa9.99□□□□□ -0.81
CUX1-219ENST00000606749 TRIM35Q9UPQ4 493 aa9.99□□□□□ -0.81
CUX1-219ENST00000606749 LAMB4A4D0S4 1761 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 DICER1Q9UPY3 1922 aaKnown RBP9.98□□□□□ -0.81
CUX1-219ENST00000606749 ANXA1P04083 346 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 HOXA10P31260 410 aaPredicted RBP9.98□□□□□ -0.81
CUX1-219ENST00000606749 WDR43Q15061 677 aaKnown RBP eCLIP9.98□□□□□ -0.81
CUX1-219ENST00000606749 COPS6Q7L5N1 327 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 PPP1R42Q7Z4L9 355 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 SYNE4Q8N205 404 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 NECTIN2Q92692 538 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 KLRG1Q96E93 195 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 ZNF277Q9NRM2 450 aaPredicted RBP9.98□□□□□ -0.81
CUX1-219ENST00000606749 ABCC12Q96J65 1359 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 NUP98P52948 1817 aa9.98□□□□□ -0.81
CUX1-219ENST00000606749 WDR90Q96KV7 1748 aa9.97□□□□□ -0.81
CUX1-219ENST00000606749 NTSR2O95665 410 aa9.97□□□□□ -0.81
CUX1-219ENST00000606749 KRT24Q2M2I5 525 aa9.97□□□□□ -0.81
CUX1-219ENST00000606749 PARP10Q53GL7 1025 aa9.97□□□□□ -0.81
CUX1-219ENST00000606749 SLC10A5Q5PT55 438 aa9.97□□□□□ -0.81
CUX1-219ENST00000606749 RPGRQ92834 1020 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms