RNA–Protein interactions for RNA: ENST00000578875.5

PPP4R1-211, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-211	ENST00000578875	ZBTB1	Q9Y2K1	713 aa		11.22	□□□□□ -0.61
PPP4R1-211	ENST00000578875	TRPA1	O75762	1119 aa		11.21	□□□□□ -0.61
PPP4R1-211	ENST00000578875	SYNE4	Q8N205	404 aa		11.21	□□□□□ -0.61
PPP4R1-211	ENST00000578875	SIN3A	Q96ST3	1273 aa		11.21	□□□□□ -0.61
PPP4R1-211	ENST00000578875	HPS5	Q9UPZ3	1129 aa		11.21	□□□□□ -0.61
PPP4R1-211	ENST00000578875	ANKRD31	Q8N7Z5	1873 aa		11.21	□□□□□ -0.62
PPP4R1-211	ENST00000578875	CANX	P27824	592 aa	Known RBP	11.2	□□□□□ -0.62
PPP4R1-211	ENST00000578875	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
PPP4R1-211	ENST00000578875	STYK1	Q6J9G0	422 aa		11.2	□□□□□ -0.62
PPP4R1-211	ENST00000578875	GPC2	Q8N158	579 aa		11.2	□□□□□ -0.62
PPP4R1-211	ENST00000578875	ZNF408	Q9H9D4	720 aa		11.2	□□□□□ -0.62
PPP4R1-211	ENST00000578875	CACNA1S	Q13698	1873 aa		11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	ST20-MTHFS	A0A0A6YYL1	179 aa		11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	MTHFS	P49914	203 aa		11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	SCNN1D	P51172	638 aa		11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	SLC39A6	Q13433	755 aa		11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	RNF186	Q9NXI6	227 aa		11.19	□□□□□ -0.62
PPP4R1-211	ENST00000578875	COL15A1	P39059	1388 aa		11.18	□□□□□ -0.62
PPP4R1-211	ENST00000578875	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.18	□□□□□ -0.62
PPP4R1-211	ENST00000578875	PUS7	Q96PZ0	661 aa	Known RBP	11.18	□□□□□ -0.62
PPP4R1-211	ENST00000578875	TBC1D2B	Q9UPU7	963 aa		11.18	□□□□□ -0.62
PPP4R1-211	ENST00000578875	TJP1	Q07157	1748 aa		11.18	□□□□□ -0.62
PPP4R1-211	ENST00000578875	WASHC2A	Q641Q2	1341 aa		11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	IARS	P41252	1262 aa	Known RBP	11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	KIF23	Q02241	960 aa	Predicted RBP	11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	CCDC93	Q567U6	631 aa		11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	CTU1	Q7Z7A3	348 aa	Known RBP	11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	SLC17A8	Q8NDX2	589 aa		11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	MASTL	Q96GX5	879 aa		11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	CARD11	Q9BXL7	1154 aa		11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	PDZRN3	Q9UPQ7	1066 aa		11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	COL11A2	P13942	1736 aa	Predicted RBP	11.17	□□□□□ -0.62
PPP4R1-211	ENST00000578875	FAM155A	B1AL88	458 aa	Predicted RBP	11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	HSP90AB1	P08238	724 aa	Known RBP	11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	EIF4A2	Q14240	407 aa	Known RBP	11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	SOGA3	Q5TF21	947 aa		11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	SLC51A	Q86UW1	340 aa		11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	HHIPL1	Q96JK4	782 aa		11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	COLQ	Q9Y215	455 aa	Predicted RBP	11.16	□□□□□ -0.62
PPP4R1-211	ENST00000578875	LMOD1	P29536	600 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-211	ENST00000578875	NOG	Q13253	232 aa		11.15	□□□□□ -0.62
PPP4R1-211	ENST00000578875	NEUROD1	Q13562	356 aa		11.15	□□□□□ -0.62
PPP4R1-211	ENST00000578875	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-211	ENST00000578875	USP50	Q70EL3	339 aa	Predicted RBP	11.15	□□□□□ -0.62
PPP4R1-211	ENST00000578875	LGR6	Q9HBX8	967 aa		11.15	□□□□□ -0.62
PPP4R1-211	ENST00000578875	TRPM7	Q96QT4	1865 aa		11.15	□□□□□ -0.63
PPP4R1-211	ENST00000578875	COL4A5	P29400	1685 aa		11.14	□□□□□ -0.63
PPP4R1-211	ENST00000578875	EIF5	P55010	431 aa	Known RBP	11.14	□□□□□ -0.63
PPP4R1-211	ENST00000578875	TESK2	Q96S53	571 aa		11.14	□□□□□ -0.63
PPP4R1-211	ENST00000578875	CARD14	Q9BXL6	1004 aa		11.14	□□□□□ -0.63
PPP4R1-211	ENST00000578875	KIF24	Q5T7B8	1368 aa		11.14	□□□□□ -0.63
PPP4R1-211	ENST00000578875	HIRA	P54198	1017 aa	Predicted RBP	11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	EIF6	P56537	245 aa	Known RBP	11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	HUNK	P57058	714 aa		11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	AKAP4	Q5JQC9	854 aa		11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	CNBD1	Q8NA66	436 aa		11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	JDP2	Q8WYK2	163 aa		11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	CSRNP1	Q96S65	589 aa		11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	POLK	Q9UBT6	870 aa		11.13	□□□□□ -0.63
PPP4R1-211	ENST00000578875	RTKN2	Q8IZC4	609 aa		11.12	□□□□□ -0.63
PPP4R1-211	ENST00000578875	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.12	□□□□□ -0.63
PPP4R1-211	ENST00000578875	POTEF	A5A3E0	1075 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	NPHP1	O15259	732 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	RGMB	Q6NW40	437 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	USP48	Q86UV5	1035 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	AEBP1	Q8IUX7	1158 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	SETDB2	Q96T68	719 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	SAGE1	Q9NXZ1	904 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	PGAP2	Q9UHJ9	254 aa		11.11	□□□□□ -0.63
PPP4R1-211	ENST00000578875	SHTN1	A0MZ66	631 aa		11.1	□□□□□ -0.63
PPP4R1-211	ENST00000578875	NPR1	P16066	1061 aa		11.1	□□□□□ -0.63
PPP4R1-211	ENST00000578875	GPRC5D	Q9NZD1	345 aa		11.1	□□□□□ -0.63
PPP4R1-211	ENST00000578875	TBC1D8	O95759	1140 aa		11.09	□□□□□ -0.63
PPP4R1-211	ENST00000578875	TNNT2	P45379	298 aa	Predicted RBP	11.09	□□□□□ -0.63
PPP4R1-211	ENST00000578875	ST5	P78524	1137 aa		11.09	□□□□□ -0.63
PPP4R1-211	ENST00000578875	C1orf141	Q5JVX7	400 aa		11.09	□□□□□ -0.63
PPP4R1-211	ENST00000578875	ADARB2	Q9NS39	739 aa	Known RBP	11.09	□□□□□ -0.63
PPP4R1-211	ENST00000578875	ZNF157	P51786	506 aa	Predicted RBP	11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875	AMOT	Q4VCS5	1084 aa		11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875	CDC37L1	Q7L3B6	337 aa		11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875	LARGE2	Q8N3Y3	721 aa		11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875	SLC52A2	Q9HAB3	445 aa		11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875	HDAC9	Q9UKV0	1011 aa		11.08	□□□□□ -0.64
PPP4R1-211	ENST00000578875		A0A087WZG4	1122 aa		11.07	□□□□□ -0.64
PPP4R1-211	ENST00000578875	KLRG2	A4D1S0	409 aa	Predicted RBP	11.07	□□□□□ -0.64
PPP4R1-211	ENST00000578875	FAM177B	A6PVY3	158 aa		11.07	□□□□□ -0.64
PPP4R1-211	ENST00000578875	CAMTA2	O94983	1202 aa		11.07	□□□□□ -0.64
PPP4R1-211	ENST00000578875	CXCL9	Q07325	125 aa		11.07	□□□□□ -0.64
PPP4R1-211	ENST00000578875	TRPM4	Q8TD43	1214 aa		11.07	□□□□□ -0.64
PPP4R1-211	ENST00000578875	TCERG1	O14776	1098 aa	Known RBP	11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	A1BG	P04217	495 aa		11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	GMPS	P49915	693 aa	Predicted RBP	11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	PKN2	Q16513	984 aa	Known RBP	11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	CCDC102A	Q96A19	550 aa		11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	PSMD1	Q99460	953 aa		11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875	SNED1	Q8TER0	1413 aa		11.06	□□□□□ -0.64
PPP4R1-211	ENST00000578875		A0A0C4DFX4	3053 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms