RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NWD1Q149M9 1564 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 ALDH1L2Q3SY69 923 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 NBPF6Q5VWK0 638 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 NBPF5PQ86XG9 351 aaPredicted RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 ANKRD20A12PQ8NF67 263 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 NBPF4Q96M43 638 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 POLR3GO15318 223 aaPredicted RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 PRPF40AO75400 957 aaKnown RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 PMFBP1Q8TBY8 1022 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLK3-226ENST00000569406 V9GYY5 206 aaPredicted RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 H0YHG0 523 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 SARNPP82979 210 aaKnown RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 SETQ01105 290 aaPredicted RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 MRPL50Q8N5N7 158 aaKnown RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 RTF1Q92541 710 aaKnown RBP12.91□□□□□ -0.34
CLK3-226ENST00000569406 PPP1R12AO14974 1030 aaPredicted RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 LRSAM1Q6UWE0 723 aa12.9□□□□□ -0.34
CLK3-226ENST00000569406 PRPF38AQ8NAV1 312 aaKnown RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 HMGB1P09429 215 aaKnown RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 NOM1Q5C9Z4 860 aaKnown RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 SMC5Q8IY18 1101 aa12.9□□□□□ -0.34
CLK3-226ENST00000569406 C8orf58Q8NAV2 365 aa12.9□□□□□ -0.34
CLK3-226ENST00000569406 NFATC2IPQ8NCF5 419 aa12.9□□□□□ -0.34
CLK3-226ENST00000569406 LRRFIP2Q9Y608 721 aaKnown RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 NPHP1O15259 732 aa12.9□□□□□ -0.34
CLK3-226ENST00000569406 TEX35Q5T0J7 233 aa12.9□□□□□ -0.34
CLK3-226ENST00000569406 NBPF10Q6P3W6 841 aaKnown RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.9□□□□□ -0.34
CLK3-226ENST00000569406 DDIT3P35638 169 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 CREBRFQ8IUR6 639 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 COG3Q96JB2 828 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 CWC15Q9P013 229 aaKnown RBP12.89□□□□□ -0.35
CLK3-226ENST00000569406 USP25Q9UHP3 1055 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 DCTN1Q14203 1278 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 TTLL5Q6EMB2 1281 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 SIRT2Q8IXJ6 389 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 IFT57Q9NWB7 429 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 CEP170BQ9Y4F5 1589 aaPredicted RBP12.89□□□□□ -0.35
CLK3-226ENST00000569406 ZBTB7BO15156 539 aaPredicted RBP12.89□□□□□ -0.35
CLK3-226ENST00000569406 SPTLC3Q9NUV7 552 aa12.89□□□□□ -0.35
CLK3-226ENST00000569406 LRRC37A3O60309 1634 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 ZSCAN26Q16670 478 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 PACS2Q86VP3 889 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 TXLNBQ8N3L3 684 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 BORCS6Q96GS4 357 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 ABCC4O15439 1325 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 CRB1P82279 1406 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 KMT5BQ4FZB7 885 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 HSP90AB2PQ58FF8 381 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 OTUD6BQ8N6M0 293 aa12.88□□□□□ -0.35
CLK3-226ENST00000569406 RRP15Q9Y3B9 282 aaKnown RBP12.87□□□□□ -0.35
CLK3-226ENST00000569406 NUTM2FA1L443 756 aa12.87□□□□□ -0.35
CLK3-226ENST00000569406 TTC19Q6DKK2 380 aaPredicted RBP12.87□□□□□ -0.35
CLK3-226ENST00000569406 ZNF397Q8NF99 534 aaPredicted RBP12.87□□□□□ -0.35
CLK3-226ENST00000569406 AMOTL2Q9Y2J4 779 aa12.87□□□□□ -0.35
CLK3-226ENST00000569406 CHD2O14647 1828 aaKnown RBP12.87□□□□□ -0.35
CLK3-226ENST00000569406 RBM5P52756 815 aaKnown RBP eCLIP12.87□□□□□ -0.35
CLK3-226ENST00000569406 ITPRIPQ8IWB1 547 aa12.87□□□□□ -0.35
CLK3-226ENST00000569406 TBX22Q9Y458 520 aa12.87□□□□□ -0.35
CLK3-226ENST00000569406 BMS1Q14692 1282 aaKnown RBP12.86□□□□□ -0.35
CLK3-226ENST00000569406 CCDC112Q8NEF3 446 aa12.86□□□□□ -0.35
CLK3-226ENST00000569406 C16orf45Q96MC5 204 aaPredicted RBP12.86□□□□□ -0.35
CLK3-226ENST00000569406 DDX19BQ9UMR2 479 aa12.86□□□□□ -0.35
CLK3-226ENST00000569406 HDGFP51858 240 aaKnown RBP12.86□□□□□ -0.35
CLK3-226ENST00000569406 IPO8O15397 1037 aaKnown RBP12.86□□□□□ -0.35
CLK3-226ENST00000569406 KRT24Q2M2I5 525 aa12.86□□□□□ -0.35
CLK3-226ENST00000569406 TSGA10IPQ3SY00 556 aa12.86□□□□□ -0.35
CLK3-226ENST00000569406 RWDD1Q9H446 243 aaPredicted RBP12.86□□□□□ -0.35
CLK3-226ENST00000569406 ESF1Q9H501 851 aaKnown RBP12.86□□□□□ -0.35
CLK3-226ENST00000569406 KDRP35968 1356 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 SRLQ86TD4 932 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 TMEM63CQ9P1W3 806 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 RBM6P78332 1123 aaKnown RBP12.85□□□□□ -0.35
CLK3-226ENST00000569406 MUM1L1Q5H9M0 696 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 ZNF428Q96B54 188 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 LMBRD1Q9NUN5 540 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 PYCARDQ9ULZ3 195 aa12.85□□□□□ -0.35
CLK3-226ENST00000569406 ADCY5O95622 1261 aa12.84□□□□□ -0.35
CLK3-226ENST00000569406 ARHGAP45Q92619 1136 aa12.84□□□□□ -0.35
CLK3-226ENST00000569406 TSPY26PQ9H489 355 aa12.84□□□□□ -0.35
CLK3-226ENST00000569406 MAP3K19Q56UN5 1328 aa12.84□□□□□ -0.35
CLK3-226ENST00000569406 ZKSCAN8Q15776 578 aaPredicted RBP12.84□□□□□ -0.35
CLK3-226ENST00000569406 GPS2Q13227 327 aa12.84□□□□□ -0.35
CLK3-226ENST00000569406 ZNF142P52746 1687 aaPredicted RBP12.83□□□□□ -0.36
CLK3-226ENST00000569406 NUCB1Q02818 461 aa12.83□□□□□ -0.36
CLK3-226ENST00000569406 SULT6B1Q6IMI4 303 aa12.83□□□□□ -0.36
CLK3-226ENST00000569406 SLC24A3Q9HC58 644 aa12.83□□□□□ -0.36
CLK3-226ENST00000569406 CWC22Q9HCG8 908 aaKnown RBP12.83□□□□□ -0.36
CLK3-226ENST00000569406 CHL1O00533 1208 aa12.83□□□□□ -0.36
CLK3-226ENST00000569406 MCTP2Q6DN12 878 aa12.83□□□□□ -0.36
CLK3-226ENST00000569406 GPT2Q8TD30 523 aa12.83□□□□□ -0.36
CLK3-226ENST00000569406 ELL2O00472 640 aaPredicted RBP12.82□□□□□ -0.36
CLK3-226ENST00000569406 GNAI1P63096 354 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 SPC24Q8NBT2 197 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 SCP2P22307 547 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 FBXO38Q6PIJ6 1188 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 FAM184AQ8NB25 1140 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 IRAK4Q9NWZ3 460 aa12.82□□□□□ -0.36
CLK3-226ENST00000569406 APBB1O00213 710 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms