RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PCDH11XQ9BZA7 1347 aa24.79■■□□□ 1.56
CLN3-230ENST00000568076 PCDH11YQ9BZA8 1340 aa24.79■■□□□ 1.56
CLN3-230ENST00000568076 RAB3GAP1Q15042 981 aa24.78■■□□□ 1.56
CLN3-230ENST00000568076 MYD88Q99836 296 aa24.78■■□□□ 1.56
CLN3-230ENST00000568076 GCKRQ14397 625 aa24.77■■□□□ 1.56
CLN3-230ENST00000568076 ANKRD13DQ6ZTN6 518 aa24.77■■□□□ 1.56
CLN3-230ENST00000568076 TNPO1Q92973 898 aaKnown RBP24.77■■□□□ 1.56
CLN3-230ENST00000568076 NEXNQ0ZGT2 675 aa24.76■■□□□ 1.55
CLN3-230ENST00000568076 CARD10Q9BWT7 1032 aa24.76■■□□□ 1.55
CLN3-230ENST00000568076 ANO2Q9NQ90 1003 aa24.76■■□□□ 1.55
CLN3-230ENST00000568076 CLASRPQ8N2M8 674 aaKnown RBP24.75■■□□□ 1.55
CLN3-230ENST00000568076 PALD1Q9ULE6 856 aa24.75■■□□□ 1.55
CLN3-230ENST00000568076 ST18O60284 1047 aa24.74■■□□□ 1.55
CLN3-230ENST00000568076 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.74■■□□□ 1.55
CLN3-230ENST00000568076 LAMB4A4D0S4 1761 aa24.74■■□□□ 1.55
CLN3-230ENST00000568076 TTC41PQ6P2S7 1318 aa24.74■■□□□ 1.55
CLN3-230ENST00000568076 ERC1Q8IUD2 1116 aa24.74■■□□□ 1.55
CLN3-230ENST00000568076 IL2RBP14784 551 aa24.73■■□□□ 1.55
CLN3-230ENST00000568076 NKX1-1Q15270 411 aaPredicted RBP24.73■■□□□ 1.55
CLN3-230ENST00000568076 EPHA10Q5JZY3 1008 aa24.73■■□□□ 1.55
CLN3-230ENST00000568076 NHSL1Q5SYE7 1610 aa24.73■■□□□ 1.55
CLN3-230ENST00000568076 SASH1O94885 1247 aa24.73■■□□□ 1.55
CLN3-230ENST00000568076 STRN4Q9NRL3 753 aa24.73■■□□□ 1.55
CLN3-230ENST00000568076 AK9Q5TCS8 1911 aa24.72■■□□□ 1.55
CLN3-230ENST00000568076 SHANK3Q9BYB0 1731 aa24.72■■□□□ 1.55
CLN3-230ENST00000568076 ERVV-2B6SEH9 535 aa24.72■■□□□ 1.55
CLN3-230ENST00000568076 CNTROBQ8N137 903 aa24.72■■□□□ 1.55
CLN3-230ENST00000568076 GLRX3O76003 335 aaKnown RBP24.71■■□□□ 1.55
CLN3-230ENST00000568076 UBR2Q8IWV8 1755 aa24.7■■□□□ 1.54
CLN3-230ENST00000568076 ARFGEF2Q9Y6D5 1785 aa24.7■■□□□ 1.54
CLN3-230ENST00000568076 NBPF26B4DH59 902 aa24.7■■□□□ 1.54
CLN3-230ENST00000568076 NBPF14Q5TI25 921 aa24.7■■□□□ 1.54
CLN3-230ENST00000568076 NBPF10Q6P3W6 841 aaKnown RBP24.7■■□□□ 1.54
CLN3-230ENST00000568076 NBPF15Q8N660 670 aa24.7■■□□□ 1.54
CLN3-230ENST00000568076 IL17RAQ96F46 866 aa24.7■■□□□ 1.54
CLN3-230ENST00000568076 SGSM2O43147 1006 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 MCCP23508 829 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 ANAPC15P60006 121 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 KCPQ6ZWJ8 1503 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 JARID2Q92833 1246 aaPredicted RBP24.69■■□□□ 1.54
CLN3-230ENST00000568076 ECHDC1Q9NTX5 307 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 IFIT2P09913 472 aaKnown RBP24.69■■□□□ 1.54
CLN3-230ENST00000568076 AACSQ86V21 672 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 KLHDC4Q8TBB5 520 aa24.69■■□□□ 1.54
CLN3-230ENST00000568076 DDX54Q8TDD1 881 aaKnown RBP24.69■■□□□ 1.54
CLN3-230ENST00000568076 PAPPAQ13219 1627 aa24.68■■□□□ 1.54
CLN3-230ENST00000568076 DDX11L8A8MPP1 907 aa24.68■■□□□ 1.54
CLN3-230ENST00000568076 EPB41L2O43491 1005 aaKnown RBP24.68■■□□□ 1.54
CLN3-230ENST00000568076 SSFA2P28290 1259 aa24.68■■□□□ 1.54
CLN3-230ENST00000568076 NEK4P51957 841 aa24.68■■□□□ 1.54
CLN3-230ENST00000568076 G3BP1Q13283 466 aaKnown RBP eCLIP24.68■■□□□ 1.54
CLN3-230ENST00000568076 PLBD2Q8NHP8 589 aa24.67■■□□□ 1.54
CLN3-230ENST00000568076 EAF2Q96CJ1 260 aaPredicted RBP24.67■■□□□ 1.54
CLN3-230ENST00000568076 ERBB4Q15303 1308 aa24.67■■□□□ 1.54
CLN3-230ENST00000568076 ATP5J2-PTCD1G3V325 749 aa24.67■■□□□ 1.54
CLN3-230ENST00000568076 TRAK2O60296 914 aa24.67■■□□□ 1.54
CLN3-230ENST00000568076 PTCD1O75127 700 aaKnown RBP24.67■■□□□ 1.54
CLN3-230ENST00000568076 EVA1CP58658 441 aa24.67■■□□□ 1.54
CLN3-230ENST00000568076 SIL1Q9H173 461 aa24.67■■□□□ 1.54
CLN3-230ENST00000568076 AFDNP55196 1824 aaKnown RBP24.66■■□□□ 1.54
CLN3-230ENST00000568076 HSPA4P34932 840 aa24.65■■□□□ 1.54
CLN3-230ENST00000568076 ZGPATQ8N5A5 531 aaKnown RBP24.65■■□□□ 1.54
CLN3-230ENST00000568076 UBE3BQ7Z3V4 1068 aa24.65■■□□□ 1.54
CLN3-230ENST00000568076 GPATCH3Q96I76 525 aa24.65■■□□□ 1.54
CLN3-230ENST00000568076 GBP4Q96PP9 640 aa24.65■■□□□ 1.54
CLN3-230ENST00000568076 RFX5P48382 616 aaPredicted RBP24.64■■□□□ 1.54
CLN3-230ENST00000568076 LSG1Q9H089 658 aaKnown RBP24.64■■□□□ 1.54
CLN3-230ENST00000568076 CCDC8Q9H0W5 538 aaPredicted RBP24.64■■□□□ 1.54
CLN3-230ENST00000568076 TLR7Q9NYK1 1049 aaKnown RBP24.64■■□□□ 1.54
CLN3-230ENST00000568076 TNS2Q63HR2 1409 aa24.64■■□□□ 1.54
CLN3-230ENST00000568076 COL15A1P39059 1388 aa24.64■■□□□ 1.53
CLN3-230ENST00000568076 RAD50Q92878 1312 aa24.64■■□□□ 1.53
CLN3-230ENST00000568076 CASP7P55210 303 aa24.63■■□□□ 1.53
CLN3-230ENST00000568076 CWC27Q6UX04 472 aaKnown RBP24.63■■□□□ 1.53
CLN3-230ENST00000568076 A1BGP04217 495 aa24.63■■□□□ 1.53
CLN3-230ENST00000568076 RABL6Q3YEC7 729 aaPredicted RBP24.63■■□□□ 1.53
CLN3-230ENST00000568076 TTLL7Q6ZT98 887 aa24.63■■□□□ 1.53
CLN3-230ENST00000568076 TOGARAM1Q9Y4F4 1720 aa24.63■■□□□ 1.53
CLN3-230ENST00000568076 A0A087WZG4 1122 aa24.62■■□□□ 1.53
CLN3-230ENST00000568076 CYP2E1P05181 493 aaPredicted RBP24.62■■□□□ 1.53
CLN3-230ENST00000568076 CLEC17AQ6ZS10 378 aa24.62■■□□□ 1.53
CLN3-230ENST00000568076 TMX3Q96JJ7 454 aa24.62■■□□□ 1.53
CLN3-230ENST00000568076 CWC22Q9HCG8 908 aaKnown RBP24.62■■□□□ 1.53
CLN3-230ENST00000568076 COPRSQ9NQ92 184 aa24.62■■□□□ 1.53
CLN3-230ENST00000568076 PKP1Q13835 747 aa24.61■■□□□ 1.53
CLN3-230ENST00000568076 PTPN12Q05209 780 aaKnown RBP24.6■■□□□ 1.53
CLN3-230ENST00000568076 NUP188Q5SRE5 1749 aa24.6■■□□□ 1.53
CLN3-230ENST00000568076 MCM2P49736 904 aa24.6■■□□□ 1.53
CLN3-230ENST00000568076 UPF3BQ9BZI7 483 aaKnown RBP24.6■■□□□ 1.53
CLN3-230ENST00000568076 GZF1Q9H116 711 aaPredicted RBP24.6■■□□□ 1.53
CLN3-230ENST00000568076 NUCB2P80303 420 aa24.59■■□□□ 1.53
CLN3-230ENST00000568076 EVI5LQ96CN4 794 aa24.59■■□□□ 1.53
CLN3-230ENST00000568076 DIAPH3Q9NSV4 1193 aa24.59■■□□□ 1.53
CLN3-230ENST00000568076 BTG4Q9NY30 223 aa24.58■■□□□ 1.53
CLN3-230ENST00000568076 H7C1W4 665 aa24.57■■□□□ 1.52
CLN3-230ENST00000568076 CUL4AQ13619 759 aa24.57■■□□□ 1.52
CLN3-230ENST00000568076 SNX14Q9Y5W7 946 aa24.57■■□□□ 1.52
CLN3-230ENST00000568076 BAG4O95429 457 aaKnown RBP24.56■■□□□ 1.52
CLN3-230ENST00000568076 RASEFQ8IZ41 740 aa24.56■■□□□ 1.52
CLN3-230ENST00000568076 FOXO4P98177 505 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms