RNA–Protein interactions for RNA: ENST00000562219.1

BBS4-205, Transcript of Bardet-Biedl syndrome 4, human

TSL 1 (best)

Gene BBS4, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BBS4-205	ENST00000562219	NUP98	P52948	1817 aa		13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	CNGB1	Q14028	1251 aa	Predicted RBP	13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	STYK1	Q6J9G0	422 aa		13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	PRPF40B	Q6NWY9	871 aa	Known RBP	13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	DZIP3	Q86Y13	1208 aa	Known RBP	13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	CNKSR1	Q969H4	720 aa		13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	RSPH6A	Q9H0K4	717 aa		13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.77	□□□□□ -0.21
BBS4-205	ENST00000562219	KCNQ3	O43525	872 aa		13.76	□□□□□ -0.21
BBS4-205	ENST00000562219	SRGN	P10124	158 aa		13.76	□□□□□ -0.21
BBS4-205	ENST00000562219	SOGA3	Q5TF21	947 aa		13.76	□□□□□ -0.21
BBS4-205	ENST00000562219	PHACTR3	Q96KR7	559 aa		13.76	□□□□□ -0.21
BBS4-205	ENST00000562219	CFAP53	Q96M91	514 aa		13.76	□□□□□ -0.21
BBS4-205	ENST00000562219	KDM3B	Q7LBC6	1761 aa		13.76	□□□□□ -0.21
BBS4-205	ENST00000562219	MASTL	Q96GX5	879 aa		13.75	□□□□□ -0.21
BBS4-205	ENST00000562219	ZNF652	Q9Y2D9	606 aa		13.75	□□□□□ -0.21
BBS4-205	ENST00000562219	CLEC4G	Q6UXB4	293 aa		13.74	□□□□□ -0.21
BBS4-205	ENST00000562219	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.74	□□□□□ -0.21
BBS4-205	ENST00000562219	USP16	Q9Y5T5	823 aa		13.74	□□□□□ -0.21
BBS4-205	ENST00000562219	ADAMTSL1	Q8N6G6	1762 aa		13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	SNRPA1	P09661	255 aa	Known RBP	13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	HSPA1A	P0DMV8	641 aa	Known RBP	13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	HSPA1B	P0DMV9	641 aa	Known RBP	13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	PIP4K2A	P48426	406 aa	Predicted RBP	13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	CHADL	Q6NUI6	762 aa		13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	TNS4	Q8IZW8	715 aa		13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	NUDC	Q9Y266	331 aa		13.73	□□□□□ -0.21
BBS4-205	ENST00000562219	PRAMEF22	A3QJZ6	481 aa		13.72	□□□□□ -0.21
BBS4-205	ENST00000562219	RGL2	O15211	777 aa		13.72	□□□□□ -0.21
BBS4-205	ENST00000562219	RTF1	Q92541	710 aa	Known RBP	13.72	□□□□□ -0.21
BBS4-205	ENST00000562219	IQCA1L	A6NCM1	817 aa		13.71	□□□□□ -0.21
BBS4-205	ENST00000562219	DDN	O94850	711 aa	Predicted RBP	13.71	□□□□□ -0.21
BBS4-205	ENST00000562219	NPR1	P16066	1061 aa		13.71	□□□□□ -0.21
BBS4-205	ENST00000562219	CCDC93	Q567U6	631 aa		13.71	□□□□□ -0.21
BBS4-205	ENST00000562219	MCM10	Q7L590	875 aa		13.71	□□□□□ -0.21
BBS4-205	ENST00000562219	CREBZF	Q9NS37	354 aa		13.71	□□□□□ -0.21
BBS4-205	ENST00000562219	KLRG2	A4D1S0	409 aa	Predicted RBP	13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	POTEI	P0CG38	1075 aa		13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	POTEJ	P0CG39	1038 aa		13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	C7orf43	Q8WVR3	580 aa		13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.7	□□□□□ -0.22
BBS4-205	ENST00000562219	NBPF26	B4DH59	902 aa		13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	HTATSF1	O43719	755 aa	Known RBP	13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	CAPN15	O75808	1086 aa		13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	PPP2R1A	P30153	589 aa		13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	NBPF10	Q6P3W6	841 aa	Known RBP	13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	TPTE2	Q6XPS3	522 aa		13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	NBPF15	Q8N660	670 aa		13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
BBS4-205	ENST00000562219	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
BBS4-205	ENST00000562219	LDHD	Q86WU2	507 aa		13.68	□□□□□ -0.22
BBS4-205	ENST00000562219	PASK	Q96RG2	1323 aa		13.67	□□□□□ -0.22
BBS4-205	ENST00000562219	DCTN1	Q14203	1278 aa		13.67	□□□□□ -0.22
BBS4-205	ENST00000562219	RTKN2	Q8IZC4	609 aa		13.67	□□□□□ -0.22
BBS4-205	ENST00000562219	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.67	□□□□□ -0.22
BBS4-205	ENST00000562219	MKRN1	Q9UHC7	482 aa	Known RBP	13.67	□□□□□ -0.22
BBS4-205	ENST00000562219	CNTNAP1	P78357	1384 aa		13.67	□□□□□ -0.22
BBS4-205	ENST00000562219	ZNF541	Q9H0D2	1346 aa		13.66	□□□□□ -0.22
BBS4-205	ENST00000562219	ANKRD36C	Q5JPF3	1778 aa		13.66	□□□□□ -0.22
BBS4-205	ENST00000562219	TRPM7	Q96QT4	1865 aa		13.66	□□□□□ -0.22
BBS4-205	ENST00000562219	TAF7	Q15545	349 aa	Predicted RBP	13.66	□□□□□ -0.22
BBS4-205	ENST00000562219	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.66	□□□□□ -0.22
BBS4-205	ENST00000562219	RIC1	Q4ADV7	1423 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	SNED1	Q8TER0	1413 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	FAM177B	A6PVY3	158 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	ALDH1B1	P30837	517 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	HLF	Q16534	295 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	OLFM4	Q6UX06	510 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	HACL1	Q9UJ83	578 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	ABCC12	Q96J65	1359 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	LAMB2	P55268	1798 aa		13.65	□□□□□ -0.22
BBS4-205	ENST00000562219	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.64	□□□□□ -0.23
BBS4-205	ENST00000562219	GTF2E1	P29083	439 aa	Predicted RBP	13.64	□□□□□ -0.23
BBS4-205	ENST00000562219	IARS	P41252	1262 aa	Known RBP	13.64	□□□□□ -0.23
BBS4-205	ENST00000562219	EAPP	Q56P03	285 aa	Predicted RBP	13.64	□□□□□ -0.23
BBS4-205	ENST00000562219	NYX	Q9GZU5	481 aa		13.64	□□□□□ -0.23
BBS4-205	ENST00000562219	LTBP1	Q14766	1721 aa		13.64	□□□□□ -0.23
BBS4-205	ENST00000562219	COL4A5	P29400	1685 aa		13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	FZD9	O00144	591 aa		13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	ITGBL1	O95965	494 aa	Predicted RBP	13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	EPHX2	P34913	555 aa		13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	CRY2	Q49AN0	593 aa		13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	MIS18A	Q9NYP9	233 aa		13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	RNF123	Q5XPI4	1314 aa		13.63	□□□□□ -0.23
BBS4-205	ENST00000562219	THSD7B	Q9C0I4	1608 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	TMEM88B	A6NKF7	163 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	ERVV-1	B6SEH8	477 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	NEFM	P07197	916 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	PNMA8A	Q86V59	439 aa	Predicted RBP	13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	GPC2	Q8N158	579 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	PNISR	Q8TF01	805 aa	Known RBP	13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	PSMD1	Q99460	953 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	MAP3K15	Q6ZN16	1313 aa		13.62	□□□□□ -0.23
BBS4-205	ENST00000562219	CC2D2B	Q6DHV5	1058 aa		13.61	□□□□□ -0.23
BBS4-205	ENST00000562219	KIF6	Q6ZMV9	814 aa		13.61	□□□□□ -0.23
BBS4-205	ENST00000562219	NUTM1	Q86Y26	1132 aa		13.61	□□□□□ -0.23
BBS4-205	ENST00000562219	SYNE4	Q8N205	404 aa		13.61	□□□□□ -0.23
BBS4-205	ENST00000562219	CLEC11A	Q9Y240	323 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms