RNA–Protein interactions for RNA: ENST00000561359.1

HERC1-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-213ENST00000561359 SEPT9Q9UHD8 586 aaPredicted RBP7.72□□□□□ -1.17
HERC1-213ENST00000561359 PXDNLA1KZ92 1463 aa7.71□□□□□ -1.18
HERC1-213ENST00000561359 CCDC85CA6NKD9 419 aa7.71□□□□□ -1.18
HERC1-213ENST00000561359 MMP10P09238 476 aa7.71□□□□□ -1.18
HERC1-213ENST00000561359 VEGFAP15692 232 aaPredicted RBP7.71□□□□□ -1.18
HERC1-213ENST00000561359 AMIGO3Q86WK7 504 aa7.71□□□□□ -1.18
HERC1-213ENST00000561359 ANKK1Q8NFD2 765 aa7.71□□□□□ -1.18
HERC1-213ENST00000561359 CDCA7LQ96GN5 454 aa7.71□□□□□ -1.18
HERC1-213ENST00000561359 PIK3C2AO00443 1686 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 SEMA3EO15041 775 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 DPEP1P16444 411 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 LBX1P52954 281 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 PRSS12P56730 875 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 THSD4Q6ZMP0 1018 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 LAPTM4BQ86VI4 370 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 ZCRB1Q8TBF4 217 aaKnown RBP7.7□□□□□ -1.18
HERC1-213ENST00000561359 LTV1Q96GA3 475 aaPredicted RBP7.7□□□□□ -1.18
HERC1-213ENST00000561359 TTC21AQ8NDW8 1320 aa7.7□□□□□ -1.18
HERC1-213ENST00000561359 NFAT5O94916 1531 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 SSFA2P28290 1259 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 VSIG10Q8N0Z9 540 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 TSKSQ9UJT2 592 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 PALLDQ8WX93 1383 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 LY75O60449 1722 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 NSD3Q9BZ95 1437 aa7.69□□□□□ -1.18
HERC1-213ENST00000561359 RGS19P49795 217 aa7.68□□□□□ -1.18
HERC1-213ENST00000561359 ZFRQ96KR1 1074 aaKnown RBP7.68□□□□□ -1.18
HERC1-213ENST00000561359 CCDC87Q9NVE4 849 aa7.68□□□□□ -1.18
HERC1-213ENST00000561359 CENPJQ9HC77 1338 aaPredicted RBP7.68□□□□□ -1.18
HERC1-213ENST00000561359 PDE4DIPQ5VU43 2346 aa7.67□□□□□ -1.18
HERC1-213ENST00000561359 NBPF26B4DH59 902 aa7.67□□□□□ -1.18
HERC1-213ENST00000561359 DALRD3Q5D0E6 543 aaKnown RBP7.67□□□□□ -1.18
HERC1-213ENST00000561359 MPRIPQ6WCQ1 1025 aa7.67□□□□□ -1.18
HERC1-213ENST00000561359 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.67□□□□□ -1.18
HERC1-213ENST00000561359 PIM2Q9P1W9 311 aa7.67□□□□□ -1.18
HERC1-213ENST00000561359 GLTPD2A6NH11 291 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 SMAPO00193 183 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 GNPATO15228 680 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 BCAMP50895 628 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 SMYD5Q6GMV2 418 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 SMARCC1Q92922 1105 aaPredicted RBP7.66□□□□□ -1.18
HERC1-213ENST00000561359 DCAF5Q96JK2 942 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 PNMA3Q9UL41 463 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 CNTNAP1P78357 1384 aa7.66□□□□□ -1.18
HERC1-213ENST00000561359 KCNA3P22001 575 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 VEGFBP49765 207 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 TMF1P82094 1093 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 NBPF1Q3BBV0 1214 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 EVC2Q86UK5 1308 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 KTN1Q86UP2 1357 aaKnown RBP7.65□□□□□ -1.18
HERC1-213ENST00000561359 NLGN1Q8N2Q7 840 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 DOT1LQ8TEK3 1739 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 TATDN2Q93075 761 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 QRICH2Q9H0J4 1663 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 WBP1LQ9NX94 342 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 PLA2G2EQ9NZK7 142 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 ZC3H4Q9UPT8 1303 aaKnown RBP7.65□□□□□ -1.18
HERC1-213ENST00000561359 PARP3Q9Y6F1 533 aa7.65□□□□□ -1.18
HERC1-213ENST00000561359 C5P01031 1676 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 TNRC6CQ9HCJ0 1690 aaKnown RBP7.64□□□□□ -1.19
HERC1-213ENST00000561359 HSPA8P11142 646 aaKnown RBP7.64□□□□□ -1.19
HERC1-213ENST00000561359 RASSF7Q02833 373 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 PADI6Q6TGC4 694 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 NUDT18Q6ZVK8 323 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 NME9Q86XW9 330 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 LINC00116Q8NCU8 138 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 IP6K1Q92551 441 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 LRCH3Q96II8 777 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.64□□□□□ -1.19
HERC1-213ENST00000561359 RBM27Q9P2N5 1060 aaKnown RBP7.64□□□□□ -1.19
HERC1-213ENST00000561359 FAM198AQ9UFP1 575 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 N4BP2Q86UW6 1770 aaPredicted RBP7.64□□□□□ -1.19
HERC1-213ENST00000561359 C4BP0C0L5 1744 aa7.64□□□□□ -1.19
HERC1-213ENST00000561359 USP54Q70EL1 1684 aa7.63□□□□□ -1.19
HERC1-213ENST00000561359 LOC102724428A0A0B4J2F2 783 aa7.63□□□□□ -1.19
HERC1-213ENST00000561359 SOWAHBA6NEL2 793 aa7.63□□□□□ -1.19
HERC1-213ENST00000561359 LMNB1P20700 586 aa7.63□□□□□ -1.19
HERC1-213ENST00000561359 SIK1P57059 783 aa7.63□□□□□ -1.19
HERC1-213ENST00000561359 NPDC1Q9NQX5 325 aaPredicted RBP7.63□□□□□ -1.19
HERC1-213ENST00000561359 USP31Q70CQ4 1352 aa7.62□□□□□ -1.19
HERC1-213ENST00000561359 PKD1L3Q7Z443 1732 aa7.62□□□□□ -1.19
HERC1-213ENST00000561359 TESPA1A2RU30 521 aaPredicted RBP7.62□□□□□ -1.19
HERC1-213ENST00000561359 TRAPPC3LQ5T215 181 aa7.62□□□□□ -1.19
HERC1-213ENST00000561359 RAPGEF4Q8WZA2 1011 aa7.62□□□□□ -1.19
HERC1-213ENST00000561359 MEGF6O75095 1541 aa7.62□□□□□ -1.19
HERC1-213ENST00000561359 KIAA1210Q9ULL0 1709 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 TNRC18O15417 2968 aaPredicted RBP7.61□□□□□ -1.19
HERC1-213ENST00000561359 POTECB2RU33 542 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 CHRNA5P30532 468 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 AMPHP49418 695 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 MAP2K1Q02750 393 aaPredicted RBP7.61□□□□□ -1.19
HERC1-213ENST00000561359 PTGDRQ13258 359 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 PIGBQ92521 554 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 RTCBQ9Y3I0 505 aaKnown RBP7.61□□□□□ -1.19
HERC1-213ENST00000561359 TOGARAM1Q9Y4F4 1720 aa7.61□□□□□ -1.19
HERC1-213ENST00000561359 UBR3Q6ZT12 1888 aa7.6□□□□□ -1.19
HERC1-213ENST00000561359 CGNL1Q0VF96 1302 aa7.6□□□□□ -1.19
HERC1-213ENST00000561359 PCDH11XQ9BZA7 1347 aa7.6□□□□□ -1.19
HERC1-213ENST00000561359 PCDH11YQ9BZA8 1340 aa7.6□□□□□ -1.19
HERC1-213ENST00000561359 TMEM88BA6NKF7 163 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms