RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CCDC87Q9NVE4 849 aa12.92□□□□□ -0.34
USP3-219ENST00000561326 C9orf78Q9NZ63 289 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 ZNF330Q9Y3S2 320 aaPredicted RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 MYH14Q7Z406 1995 aaKnown RBP12.92□□□□□ -0.34
USP3-219ENST00000561326 NUP98P52948 1817 aa12.91□□□□□ -0.34
USP3-219ENST00000561326 MEIS3Q99687 375 aa12.91□□□□□ -0.34
USP3-219ENST00000561326 USP44Q9H0E7 712 aa12.91□□□□□ -0.34
USP3-219ENST00000561326 LY75O60449 1722 aa12.91□□□□□ -0.34
USP3-219ENST00000561326 KDM2BQ8NHM5 1336 aa12.9□□□□□ -0.34
USP3-219ENST00000561326 HMMRO75330 724 aa12.9□□□□□ -0.34
USP3-219ENST00000561326 IGHDP01880 384 aa12.9□□□□□ -0.34
USP3-219ENST00000561326 CRKLP46109 303 aaKnown RBP12.9□□□□□ -0.34
USP3-219ENST00000561326 MYD88Q99836 296 aa12.9□□□□□ -0.34
USP3-219ENST00000561326 IBTKQ9P2D0 1353 aaPredicted RBP12.9□□□□□ -0.34
USP3-219ENST00000561326 COL5A3P25940 1745 aaPredicted RBP12.9□□□□□ -0.34
USP3-219ENST00000561326 TAF1LQ8IZX4 1826 aa12.9□□□□□ -0.34
USP3-219ENST00000561326 NUP188Q5SRE5 1749 aa12.89□□□□□ -0.35
USP3-219ENST00000561326 A0A087WZG4 1122 aa12.89□□□□□ -0.35
USP3-219ENST00000561326 HSP90AB3PQ58FF7 597 aa12.89□□□□□ -0.35
USP3-219ENST00000561326 RC3H1Q5TC82 1133 aaKnown RBP12.89□□□□□ -0.35
USP3-219ENST00000561326 TTLL7Q6ZT98 887 aa12.89□□□□□ -0.35
USP3-219ENST00000561326 RGS17Q9UGC6 210 aaPredicted RBP12.89□□□□□ -0.35
USP3-219ENST00000561326 CCNL1Q9UK58 526 aaPredicted RBP12.89□□□□□ -0.35
USP3-219ENST00000561326 NEURL1BA8MQ27 555 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 ERVV-1B6SEH8 477 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 TRIM37O94972 964 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 ITPK1Q13572 414 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 INTS5Q6P9B9 1019 aaKnown RBP12.88□□□□□ -0.35
USP3-219ENST00000561326 POTEAQ6S8J7 498 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 PTF1AQ7RTS3 328 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 ANKRD44Q8N8A2 993 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 GCC1Q96CN9 775 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 ZBTB3Q9H5J0 574 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 C1orf115Q9H7X2 142 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 ZBTB1Q9Y2K1 713 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 MAP3K15Q6ZN16 1313 aa12.88□□□□□ -0.35
USP3-219ENST00000561326 GRM8O00222 908 aa12.87□□□□□ -0.35
USP3-219ENST00000561326 EIF5P55010 431 aaKnown RBP12.87□□□□□ -0.35
USP3-219ENST00000561326 TCIRG1Q13488 830 aa12.87□□□□□ -0.35
USP3-219ENST00000561326 GCKRQ14397 625 aa12.87□□□□□ -0.35
USP3-219ENST00000561326 CWF19L2Q2TBE0 894 aaKnown RBP12.87□□□□□ -0.35
USP3-219ENST00000561326 DZIP3Q86Y13 1208 aaKnown RBP12.87□□□□□ -0.35
USP3-219ENST00000561326 CCDC191Q8NCU4 936 aa12.87□□□□□ -0.35
USP3-219ENST00000561326 ZBTB47Q9UFB7 747 aaPredicted RBP12.87□□□□□ -0.35
USP3-219ENST00000561326 CNTNAP4Q9C0A0 1308 aa12.87□□□□□ -0.35
USP3-219ENST00000561326 RREB1Q92766 1687 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 IGKV5-2P06315 115 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 ATP8B2P98198 1209 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 SLC27A3Q5K4L6 730 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 CEP85Q6P2H3 762 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 GIGYF2Q6Y7W6 1299 aaKnown RBP12.86□□□□□ -0.35
USP3-219ENST00000561326 CWC25Q9NXE8 425 aaPredicted RBP12.86□□□□□ -0.35
USP3-219ENST00000561326 LRRFIP2Q9Y608 721 aaKnown RBP12.86□□□□□ -0.35
USP3-219ENST00000561326 ANKRD36CQ5JPF3 1778 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 UTYO14607 1347 aa12.86□□□□□ -0.35
USP3-219ENST00000561326 NBPF7P0C2Y1 421 aaPredicted RBP12.85□□□□□ -0.35
USP3-219ENST00000561326 TRIM28Q13263 835 aaKnown RBP12.85□□□□□ -0.35
USP3-219ENST00000561326 SMC5Q8IY18 1101 aa12.85□□□□□ -0.35
USP3-219ENST00000561326 LINC00116Q8NCU8 138 aa12.85□□□□□ -0.35
USP3-219ENST00000561326 ATP5J2-PTCD1G3V325 749 aa12.84□□□□□ -0.35
USP3-219ENST00000561326 PLSCR1O15162 318 aa12.84□□□□□ -0.35
USP3-219ENST00000561326 RPS6KA4O75676 772 aa12.84□□□□□ -0.35
USP3-219ENST00000561326 SIRT2Q8IXJ6 389 aa12.84□□□□□ -0.35
USP3-219ENST00000561326 TBC1D2BQ9UPU7 963 aa12.84□□□□□ -0.35
USP3-219ENST00000561326 ZNF652Q9Y2D9 606 aa12.84□□□□□ -0.35
USP3-219ENST00000561326 RTCBQ9Y3I0 505 aaKnown RBP12.84□□□□□ -0.35
USP3-219ENST00000561326 RGL2O15211 777 aa12.83□□□□□ -0.36
USP3-219ENST00000561326 APBA3O96018 575 aa12.83□□□□□ -0.36
USP3-219ENST00000561326 ISCA1Q9BUE6 129 aa12.83□□□□□ -0.36
USP3-219ENST00000561326 DCTPP1Q9H773 170 aa12.83□□□□□ -0.36
USP3-219ENST00000561326 H7C1W4 665 aa12.82□□□□□ -0.36
USP3-219ENST00000561326 KCNQ4P56696 695 aa12.82□□□□□ -0.36
USP3-219ENST00000561326 CLEC4GQ6UXB4 293 aa12.82□□□□□ -0.36
USP3-219ENST00000561326 AK7Q96M32 723 aa12.82□□□□□ -0.36
USP3-219ENST00000561326 COL15A1P39059 1388 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 ZPR1O75312 459 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 HLFQ16534 295 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 HSP90AB4PQ58FF6 505 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 UBE3BQ7Z3V4 1068 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 PPP1R42Q7Z4L9 355 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 PDZRN3Q9UPQ7 1066 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 MYH3P11055 1940 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 C4BP0C0L5 1744 aa12.81□□□□□ -0.36
USP3-219ENST00000561326 GNPATO15228 680 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 SRGAP3O43295 1099 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 HSP90B1P14625 803 aaKnown RBP12.8□□□□□ -0.36
USP3-219ENST00000561326 NUCB1Q02818 461 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 MTX1Q13505 466 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 TRAPPC3LQ5T215 181 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 ANKRD45Q5TZF3 282 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 SSH3Q8TE77 659 aa12.8□□□□□ -0.36
USP3-219ENST00000561326 CAMTA2O94983 1202 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 PCCAP05165 728 aaPredicted RBP12.79□□□□□ -0.36
USP3-219ENST00000561326 ADRA2BP18089 450 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 RFC4P35249 363 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 TXNRD1Q16881 649 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 PARP10Q53GL7 1025 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 ZNF34Q8IZ26 560 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 ZBTB38Q8NAP3 1195 aaPredicted RBP12.79□□□□□ -0.36
USP3-219ENST00000561326 SUCLG2Q96I99 432 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms