RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 LAMB2P55268 1798 aa14.29□□□□□ -0.12
TPM1-227ENST00000560970 VEGFAP15692 232 aaPredicted RBP14.28□□□□□ -0.12
TPM1-227ENST00000560970 DZIP3Q86Y13 1208 aaKnown RBP14.28□□□□□ -0.12
TPM1-227ENST00000560970 ZNF622Q969S3 477 aaKnown RBP eCLIP14.28□□□□□ -0.126e-7■■□□□ 13.8
TPM1-227ENST00000560970 SETDB2Q96T68 719 aa14.28□□□□□ -0.12
TPM1-227ENST00000560970 A1BGP04217 495 aa14.27□□□□□ -0.13
TPM1-227ENST00000560970 RALBP1Q15311 655 aa14.27□□□□□ -0.13
TPM1-227ENST00000560970 PHACTR3Q96KR7 559 aa14.27□□□□□ -0.13
TPM1-227ENST00000560970 TAOK3Q9H2K8 898 aa14.27□□□□□ -0.13
TPM1-227ENST00000560970 NUDCQ9Y266 331 aa14.27□□□□□ -0.13
TPM1-227ENST00000560970 KCNQ3O43525 872 aa14.26□□□□□ -0.13
TPM1-227ENST00000560970 C21orf2O43822 256 aa14.26□□□□□ -0.13
TPM1-227ENST00000560970 SOGA3Q5TF21 947 aa14.26□□□□□ -0.13
TPM1-227ENST00000560970 STYK1Q6J9G0 422 aa14.26□□□□□ -0.13
TPM1-227ENST00000560970 PRPF40BQ6NWY9 871 aaKnown RBP14.26□□□□□ -0.13
TPM1-227ENST00000560970 CCDC24Q8N4L8 307 aa14.26□□□□□ -0.13
TPM1-227ENST00000560970 RTF1Q92541 710 aaKnown RBP14.26□□□□□ -0.13
TPM1-227ENST00000560970 ZNF652Q9Y2D9 606 aa14.26□□□□□ -0.13
TPM1-227ENST00000560970 MYBBP1AQ9BQG0 1328 aaKnown RBP14.25□□□□□ -0.13
TPM1-227ENST00000560970 ERFEQ4G0M1 354 aa14.25□□□□□ -0.13
TPM1-227ENST00000560970 CNKSR1Q969H4 720 aa14.25□□□□□ -0.13
TPM1-227ENST00000560970 PRKRIP1Q9H875 184 aaPredicted RBP14.25□□□□□ -0.13
TPM1-227ENST00000560970 RGL2O15211 777 aa14.24□□□□□ -0.13
TPM1-227ENST00000560970 U2AF1L5P0DN76 240 aaPredicted RBP14.24□□□□□ -0.13
TPM1-227ENST00000560970 SRGNP10124 158 aa14.24□□□□□ -0.13
TPM1-227ENST00000560970 PIP4K2AP48426 406 aaPredicted RBP14.24□□□□□ -0.13
TPM1-227ENST00000560970 U2AF1Q01081 240 aaKnown RBP eCLIP14.24□□□□□ -0.136e-9■■■■□ 21.7
TPM1-227ENST00000560970 DPY19L2Q6NUT2 758 aa14.24□□□□□ -0.13
TPM1-227ENST00000560970 MASTLQ96GX5 879 aa14.24□□□□□ -0.13
TPM1-227ENST00000560970 ZNF219Q9P2Y4 722 aaPredicted RBP14.24□□□□□ -0.13
TPM1-227ENST00000560970 THSD7BQ9C0I4 1608 aa14.23□□□□□ -0.13
TPM1-227ENST00000560970 PRAMEF22A3QJZ6 481 aa14.23□□□□□ -0.13
TPM1-227ENST00000560970 SNRPA1P09661 255 aaKnown RBP14.23□□□□□ -0.13
TPM1-227ENST00000560970 CLEC4GQ6UXB4 293 aa14.23□□□□□ -0.13
TPM1-227ENST00000560970 MCM10Q7L590 875 aa14.23□□□□□ -0.13
TPM1-227ENST00000560970 NBPF5PQ86XG9 351 aaPredicted RBP14.23□□□□□ -0.13
TPM1-227ENST00000560970 RIC1Q4ADV7 1423 aa14.23□□□□□ -0.13
TPM1-227ENST00000560970 TRPM7Q96QT4 1865 aa14.23□□□□□ -0.13
TPM1-227ENST00000560970 CCDC93Q567U6 631 aa14.22□□□□□ -0.13
TPM1-227ENST00000560970 USP16Q9Y5T5 823 aa14.22□□□□□ -0.13
TPM1-227ENST00000560970 POTECB2RU33 542 aa14.21□□□□□ -0.13
TPM1-227ENST00000560970 HTATSF1O43719 755 aaKnown RBP14.21□□□□□ -0.13
TPM1-227ENST00000560970 SNED1Q8TER0 1413 aa14.21□□□□□ -0.13
TPM1-227ENST00000560970 LTBP1Q14766 1721 aa14.21□□□□□ -0.14
TPM1-227ENST00000560970 ABCC12Q96J65 1359 aa14.21□□□□□ -0.14
TPM1-227ENST00000560970 IBTKQ9P2D0 1353 aaPredicted RBP14.21□□□□□ -0.14
TPM1-227ENST00000560970 NPR1P16066 1061 aa14.2□□□□□ -0.14
TPM1-227ENST00000560970 KCNA4P22459 653 aa14.2□□□□□ -0.14
TPM1-227ENST00000560970 NIP7Q9Y221 180 aaKnown RBP eCLIP14.2□□□□□ -0.14
TPM1-227ENST00000560970 LRRC37AA6NMS7 1700 aa14.19□□□□□ -0.14
TPM1-227ENST00000560970 DDX60Q8IY21 1712 aaKnown RBP14.19□□□□□ -0.14
TPM1-227ENST00000560970 NBPF26B4DH59 902 aa14.19□□□□□ -0.14
TPM1-227ENST00000560970 DCTN1Q14203 1278 aa14.19□□□□□ -0.14
TPM1-227ENST00000560970 NBPF10Q6P3W6 841 aaKnown RBP14.19□□□□□ -0.14
TPM1-227ENST00000560970 NBPF15Q8N660 670 aa14.19□□□□□ -0.14
TPM1-227ENST00000560970 COL4A5P29400 1685 aa14.18□□□□□ -0.14
TPM1-227ENST00000560970 IQCA1LA6NCM1 817 aa14.18□□□□□ -0.14
TPM1-227ENST00000560970 CHADLQ6NUI6 762 aa14.18□□□□□ -0.14
TPM1-227ENST00000560970 KLRG2A4D1S0 409 aaPredicted RBP14.17□□□□□ -0.14
TPM1-227ENST00000560970 DDNO94850 711 aaPredicted RBP14.17□□□□□ -0.14
TPM1-227ENST00000560970 NEFMP07197 916 aa14.17□□□□□ -0.14
TPM1-227ENST00000560970 HSPA1AP0DMV8 641 aaKnown RBP14.17□□□□□ -0.14
TPM1-227ENST00000560970 HSPA1BP0DMV9 641 aaKnown RBP14.17□□□□□ -0.14
TPM1-227ENST00000560970 FKBP4Q02790 459 aaKnown RBP eCLIP14.17□□□□□ -0.14
TPM1-227ENST00000560970 COL13A1Q5TAT6 717 aaPredicted RBP14.17□□□□□ -0.14
TPM1-227ENST00000560970 L3MBTL3Q96JM7 780 aaPredicted RBP14.17□□□□□ -0.14
TPM1-227ENST00000560970 ZNF541Q9H0D2 1346 aa14.16□□□□□ -0.14
TPM1-227ENST00000560970 TAF7Q15545 349 aaPredicted RBP14.16□□□□□ -0.14
TPM1-227ENST00000560970 TPTE2Q6XPS3 522 aa14.16□□□□□ -0.14
TPM1-227ENST00000560970 LDHDQ86WU2 507 aa14.16□□□□□ -0.14
TPM1-227ENST00000560970 C7orf43Q8WVR3 580 aa14.16□□□□□ -0.14
TPM1-227ENST00000560970 PLEKHF1Q96S99 279 aa14.16□□□□□ -0.14
TPM1-227ENST00000560970 CREBZFQ9NS37 354 aa14.16□□□□□ -0.14
TPM1-227ENST00000560970 POTEIP0CG38 1075 aa14.15□□□□□ -0.14
TPM1-227ENST00000560970 POTEJP0CG39 1038 aa14.15□□□□□ -0.14
TPM1-227ENST00000560970 PNISRQ8TF01 805 aaKnown RBP14.15□□□□□ -0.14
TPM1-227ENST00000560970 NYXQ9GZU5 481 aa14.15□□□□□ -0.14
TPM1-227ENST00000560970 MAP3K15Q6ZN16 1313 aa14.15□□□□□ -0.15
TPM1-227ENST00000560970 CNTNAP1P78357 1384 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 FAM177BA6PVY3 158 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 HLFQ16534 295 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 CCDC184Q52MB2 194 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 KIF6Q6ZMV9 814 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 RTKN2Q8IZC4 609 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 TNS4Q8IZW8 715 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 ZNF277Q9NRM2 450 aaPredicted RBP14.14□□□□□ -0.15
TPM1-227ENST00000560970 PASKQ96RG2 1323 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 MAPK8IP3Q9UPT6 1336 aa14.14□□□□□ -0.15
TPM1-227ENST00000560970 TAF1P21675 1872 aa14.13□□□□□ -0.15
TPM1-227ENST00000560970 CRY2Q49AN0 593 aa14.13□□□□□ -0.15
TPM1-227ENST00000560970 TAF1DQ9H5J8 278 aaPredicted RBP14.13□□□□□ -0.15
TPM1-227ENST00000560970 ERBB4Q15303 1308 aa14.13□□□□□ -0.15
TPM1-227ENST00000560970 ERVV-1B6SEH8 477 aa14.12□□□□□ -0.15
TPM1-227ENST00000560970 GTF2E1P29083 439 aaPredicted RBP14.12□□□□□ -0.15
TPM1-227ENST00000560970 ALDH1B1P30837 517 aa14.12□□□□□ -0.15
TPM1-227ENST00000560970 IARSP41252 1262 aaKnown RBP14.12□□□□□ -0.15
TPM1-227ENST00000560970 NFE2L2Q16236 605 aa14.12□□□□□ -0.15
TPM1-227ENST00000560970 OLFM4Q6UX06 510 aa14.12□□□□□ -0.15
TPM1-227ENST00000560970 MIS18AQ9NYP9 233 aa14.12□□□□□ -0.15
TPM1-227ENST00000560970 UBN2Q6ZU65 1347 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms