RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 PRIMPOLQ96LW4 560 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 RBM42Q9BTD8 480 aaKnown RBP15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 TUBB4BP68371 445 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 TXNDC16Q9P2K2 825 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 ATP2A2P16615 1042 aaKnown RBP15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 LRSAM1Q6UWE0 723 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 LMNTD2Q8IXW0 634 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 CPLX3Q8WVH0 158 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 JAKMIP2Q96AA8 810 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 LRRC27Q9C0I9 530 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 SELENOSQ9BQE4 189 aa15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 NOB1Q9ULX3 412 aaKnown RBP15.87■□□□□ 0.13
CSPG4P12-202ENST00000559989 GSTA5Q7RTV2 222 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 CCT6BQ92526 530 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 SEC62Q99442 399 aaKnown RBP15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 PRDM2Q13029 1718 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 CCDC12Q8WUD4 166 aaPredicted RBP15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 PRR16Q569H4 304 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 AIDAQ96BJ3 306 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 NUF2Q9BZD4 464 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 C1orf115Q9H7X2 142 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 GAS8O95995 478 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 ARID4AP29374 1257 aaPredicted RBP15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 SSRP1Q08945 709 aaKnown RBP15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 A0A1B0GUA9 196 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 CNGA1P29973 690 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 EBAG9O00559 213 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 CCDC114Q96M63 670 aa15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 UTP14AQ9BVJ6 771 aaKnown RBP15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.86■□□□□ 0.13
CSPG4P12-202ENST00000559989 VPS52Q8N1B4 723 aa15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 CCDC7Q96M83 1385 aa15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 PDE1CQ14123 709 aaPredicted RBP15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 C8orf76Q96K31 380 aa15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 SAMD15Q9P1V8 674 aa15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 RNF168Q8IYW5 571 aaPredicted RBP15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 TCERG1LQ5VWI1 586 aa15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 IFT74Q96LB3 600 aa15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.85■□□□□ 0.13
CSPG4P12-202ENST00000559989 RAB3IPQ96QF0 476 aaPredicted RBP15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 MKNK2Q9HBH9 465 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 MGEA5O60502 916 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 LIG1P18858 919 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 CHD1LQ86WJ1 897 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 STX6O43752 255 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 ERCC3P19447 782 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 NCAPGQ9BPX3 1015 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 PIP4K2BP78356 416 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 PDE3AQ14432 1141 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 WDR70Q9NW82 654 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 PNISRQ8TF01 805 aaKnown RBP15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 CRCPO75575 148 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 POLR3DP05423 398 aaPredicted RBP15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 CEP85LQ5SZL2 805 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 SPTY2D1Q68D10 685 aaPredicted RBP15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 CPLX4Q7Z7G2 160 aa15.84■□□□□ 0.13
CSPG4P12-202ENST00000559989 AKAP2Q9Y2D5 859 aa15.83■□□□□ 0.13
CSPG4P12-202ENST00000559989 MAP7Q14244 749 aa15.83■□□□□ 0.13
CSPG4P12-202ENST00000559989 MPHOSPH6Q99547 160 aaKnown RBP15.83■□□□□ 0.13
CSPG4P12-202ENST00000559989 HMGB2P26583 209 aaKnown RBP15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 DDX27Q96GQ7 796 aaKnown RBP15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 TWISTNBQ3B726 338 aaPredicted RBP15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 USP37Q86T82 979 aa15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 CRACR2BQ8N4Y2 399 aaPredicted RBP15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 XPCQ01831 940 aaPredicted RBP15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 CCDC50Q8IVM0 306 aa15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 SH2D4BQ5SQS7 431 aa15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 VCXQ9H320 206 aa15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 TACC3Q9Y6A5 838 aa15.83■□□□□ 0.12
CSPG4P12-202ENST00000559989 ATP5DP30049 168 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 SH2B1Q9NRF2 756 aaPredicted RBP15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 TCP11L1Q9NUJ3 509 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 MYO1BO43795 1136 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 KRT13P13646 458 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 CYLC1P35663 651 aaPredicted RBP15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 SPAG5Q96R06 1193 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 DHX57Q6P158 1386 aaKnown RBP15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 PFDN4Q9NQP4 134 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 SEPT8Q92599 483 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 CTAGE9A4FU28 777 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 IGHMBP2P38935 993 aaKnown RBP15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 CABP4P57796 275 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 INTS8Q75QN2 995 aaKnown RBP15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 CTAGE1Q96RT6 745 aa15.82■□□□□ 0.12
CSPG4P12-202ENST00000559989 CTCFLQ8NI51 663 aaPredicted RBP15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 LMBR1Q8WVP7 490 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 DDX19AQ9NUU7 478 aaKnown RBP15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 BRD4O60885 1362 aaPredicted RBP15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 STRN4Q9NRL3 753 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 GNG11P61952 73 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 CEP128Q6ZU80 1094 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 CAPN2P17655 700 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 MVPQ14764 893 aaKnown RBP15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 BICD1Q96G01 975 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 RMND1Q9NWS8 449 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 PCK1P35558 622 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 NBPF11Q86T75 865 aa15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 CACYBPQ9HB71 228 aaKnown RBP15.81■□□□□ 0.12
CSPG4P12-202ENST00000559989 CTAGE15A4D2H0 777 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms