RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 NBPF10Q6P3W6 841 aaKnown RBP16.17■□□□□ 0.18
SPG11-219ENST00000559822 NBPF15Q8N660 670 aa16.17■□□□□ 0.18
SPG11-219ENST00000559822 MIS18AQ9NYP9 233 aa16.17■□□□□ 0.18
SPG11-219ENST00000559822 COL11A2P13942 1736 aaPredicted RBP16.16■□□□□ 0.18
SPG11-219ENST00000559822 APLP1P51693 650 aa16.16■□□□□ 0.18
SPG11-219ENST00000559822 SOGA3Q5TF21 947 aa16.16■□□□□ 0.18
SPG11-219ENST00000559822 TPTE2Q6XPS3 522 aa16.16■□□□□ 0.18
SPG11-219ENST00000559822 CCDC24Q8N4L8 307 aa16.16■□□□□ 0.18
SPG11-219ENST00000559822 RBM46Q8TBY0 533 aaKnown RBP16.16■□□□□ 0.18
SPG11-219ENST00000559822 MASTLQ96GX5 879 aa16.16■□□□□ 0.18
SPG11-219ENST00000559822 NIP7Q9Y221 180 aaKnown RBP eCLIP16.16■□□□□ 0.18
SPG11-219ENST00000559822 NFKBIEO00221 500 aa16.15■□□□□ 0.18
SPG11-219ENST00000559822 EIF4A1P60842 406 aaKnown RBP16.15■□□□□ 0.18
SPG11-219ENST00000559822 LMOD3Q0VAK6 560 aa16.15■□□□□ 0.18
SPG11-219ENST00000559822 MYBBP1AQ9BQG0 1328 aaKnown RBP16.15■□□□□ 0.18
SPG11-219ENST00000559822 C21orf2O43822 256 aa16.14■□□□□ 0.17
SPG11-219ENST00000559822 SRGNP10124 158 aa16.14■□□□□ 0.17
SPG11-219ENST00000559822 KIF6Q6ZMV9 814 aa16.14■□□□□ 0.17
SPG11-219ENST00000559822 ERBB4Q15303 1308 aa16.14■□□□□ 0.17
SPG11-219ENST00000559822 TIAM2Q8IVF5 1701 aa16.14■□□□□ 0.17
SPG11-219ENST00000559822 ARFGEF2Q9Y6D5 1785 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 ERVV-1B6SEH8 477 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 GTF2E1P29083 439 aaPredicted RBP16.13■□□□□ 0.17
SPG11-219ENST00000559822 RIPK4P57078 832 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 FSTL1Q12841 308 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 DDX10Q13206 875 aaKnown RBP16.13■□□□□ 0.17
SPG11-219ENST00000559822 PRPF40BQ6NWY9 871 aaKnown RBP16.13■□□□□ 0.17
SPG11-219ENST00000559822 THUMPD2Q9BTF0 503 aaKnown RBP16.13■□□□□ 0.17
SPG11-219ENST00000559822 RRAGCQ9HB90 399 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 BABAM1Q9NWV8 329 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 TSPYL4Q9UJ04 414 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 LTBP3Q9NS15 1303 aa16.13■□□□□ 0.17
SPG11-219ENST00000559822 GLTPD2A6NH11 291 aa16.12■□□□□ 0.17
SPG11-219ENST00000559822 NPR1P16066 1061 aa16.12■□□□□ 0.17
SPG11-219ENST00000559822 DPY19L2Q6NUT2 758 aa16.12■□□□□ 0.17
SPG11-219ENST00000559822 NYXQ9GZU5 481 aa16.12■□□□□ 0.17
SPG11-219ENST00000559822 TAOK3Q9H2K8 898 aa16.12■□□□□ 0.17
SPG11-219ENST00000559822 ZNF219Q9P2Y4 722 aaPredicted RBP16.12■□□□□ 0.17
SPG11-219ENST00000559822 FER1L6Q2WGJ9 1857 aa16.12■□□□□ 0.17
SPG11-219ENST00000559822 RRP7AQ9Y3A4 280 aaKnown RBP16.11■□□□□ 0.17
SPG11-219ENST00000559822 CCDC88AQ3V6T2 1871 aa16.11■□□□□ 0.17
SPG11-219ENST00000559822 MAP3K15Q6ZN16 1313 aa16.11■□□□□ 0.17
SPG11-219ENST00000559822 KLRG2A4D1S0 409 aaPredicted RBP16.1■□□□□ 0.17
SPG11-219ENST00000559822 VEGFAP15692 232 aaPredicted RBP16.1■□□□□ 0.17
SPG11-219ENST00000559822 PRELPP51888 382 aa16.1■□□□□ 0.17
SPG11-219ENST00000559822 WDR43Q15061 677 aaKnown RBP eCLIP16.1■□□□□ 0.17
SPG11-219ENST00000559822 HLFQ16534 295 aa16.1■□□□□ 0.17
SPG11-219ENST00000559822 ERFEQ4G0M1 354 aa16.1■□□□□ 0.17
SPG11-219ENST00000559822 NGEFQ8N5V2 710 aa16.1■□□□□ 0.17
SPG11-219ENST00000559822 CACNA1SQ13698 1873 aa16.1■□□□□ 0.17
SPG11-219ENST00000559822 FAM177BA6PVY3 158 aa16.09■□□□□ 0.17
SPG11-219ENST00000559822 MYL6BP14649 208 aa16.09■□□□□ 0.17
SPG11-219ENST00000559822 TMPOP42166 694 aaKnown RBP16.09■□□□□ 0.17
SPG11-219ENST00000559822 CCDC93Q567U6 631 aa16.09■□□□□ 0.17
SPG11-219ENST00000559822 SMC1BQ8NDV3 1235 aa16.09■□□□□ 0.17
SPG11-219ENST00000559822 SLX4Q8IY92 1834 aa16.09■□□□□ 0.17
SPG11-219ENST00000559822 DICER1Q9UPY3 1922 aaKnown RBP16.09■□□□□ 0.17
SPG11-219ENST00000559822 CEP350Q5VT06 3117 aa16.09■□□□□ 0.17
SPG11-219ENST00000559822 ALDH1B1P30837 517 aa16.08■□□□□ 0.16
SPG11-219ENST00000559822 IBTKQ9P2D0 1353 aaPredicted RBP16.08■□□□□ 0.16
SPG11-219ENST00000559822 NUP98P52948 1817 aa16.08■□□□□ 0.16
SPG11-219ENST00000559822 WDR90Q96KV7 1748 aa16.06■□□□□ 0.16
SPG11-219ENST00000559822 RIC1Q4ADV7 1423 aa16.06■□□□□ 0.16
SPG11-219ENST00000559822 TTLL7Q6ZT98 887 aa16.06■□□□□ 0.16
SPG11-219ENST00000559822 RTKN2Q8IZC4 609 aa16.06■□□□□ 0.16
SPG11-219ENST00000559822 RUNDC1Q96C34 613 aa16.06■□□□□ 0.16
SPG11-219ENST00000559822 ZBTB3Q9H5J0 574 aa16.06■□□□□ 0.16
SPG11-219ENST00000559822 GIGYF2Q6Y7W6 1299 aaKnown RBP16.05■□□□□ 0.16
SPG11-219ENST00000559822 C7orf43Q8WVR3 580 aa16.05■□□□□ 0.16
SPG11-219ENST00000559822 EIF2S2P20042 333 aaKnown RBP16.04■□□□□ 0.16
SPG11-219ENST00000559822 GPTP24298 496 aa16.04■□□□□ 0.16
SPG11-219ENST00000559822 FKBP4Q02790 459 aaKnown RBP eCLIP16.04■□□□□ 0.16
SPG11-219ENST00000559822 NEUROD2Q15784 382 aa16.04■□□□□ 0.16
SPG11-219ENST00000559822 PARP10Q53GL7 1025 aa16.04■□□□□ 0.16
SPG11-219ENST00000559822 PPP1R42Q7Z4L9 355 aa16.04■□□□□ 0.16
SPG11-219ENST00000559822 CCDC146Q8IYE0 955 aa16.04■□□□□ 0.16
SPG11-219ENST00000559822 RPGRQ92834 1020 aaKnown RBP16.04■□□□□ 0.16
SPG11-219ENST00000559822 ABCC12Q96J65 1359 aa16.03■□□□□ 0.16
SPG11-219ENST00000559822 CRY2Q49AN0 593 aa16.03■□□□□ 0.16
SPG11-219ENST00000559822 NUTM1Q86Y26 1132 aa16.03■□□□□ 0.16
SPG11-219ENST00000559822 ZNF34Q8IZ26 560 aa16.03■□□□□ 0.16
SPG11-219ENST00000559822 UBN2Q6ZU65 1347 aa16.02■□□□□ 0.16
SPG11-219ENST00000559822 CC2D2BQ6DHV5 1058 aa16.02■□□□□ 0.16
SPG11-219ENST00000559822 PRKRIP1Q9H875 184 aaPredicted RBP16.02■□□□□ 0.16
SPG11-219ENST00000559822 RNF123Q5XPI4 1314 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 CHL1O00533 1208 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 PDIA6Q15084 440 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 GRIPAP1Q4V328 841 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 HSP90AB3PQ58FF7 597 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 SUSD4Q5VX71 490 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 DNAJC5GQ8N7S2 189 aa16.01■□□□□ 0.15
SPG11-219ENST00000559822 RBM17Q96I25 401 aaKnown RBP16.01■□□□□ 0.15
SPG11-219ENST00000559822 IQCA1LA6NCM1 817 aa16■□□□□ 0.15
SPG11-219ENST00000559822 NTSR2O95665 410 aa16■□□□□ 0.15
SPG11-219ENST00000559822 HOXB7P09629 217 aa16■□□□□ 0.15
SPG11-219ENST00000559822 HOXA10P31260 410 aaPredicted RBP16■□□□□ 0.15
SPG11-219ENST00000559822 LRP10Q7Z4F1 713 aa16■□□□□ 0.15
SPG11-219ENST00000559822 DDX21Q9NR30 783 aaKnown RBP eCLIP16■□□□□ 0.15
SPG11-219ENST00000559822 ADAMTS8Q9UP79 889 aa16■□□□□ 0.15
SPG11-219ENST00000559822 LAS1LQ9Y4W2 734 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms