RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 KIF6Q6ZMV9 814 aa27.84■■■□□ 2.05
SNX1-206ENST00000559389 COPS6Q7L5N1 327 aa27.84■■■□□ 2.05
SNX1-206ENST00000559389 ARXQ96QS3 562 aa27.83■■■□□ 2.05
SNX1-206ENST00000559389 FKBP8Q14318 412 aa27.82■■■□□ 2.04
SNX1-206ENST00000559389 PHAXQ9H814 394 aaKnown RBP27.82■■■□□ 2.04
SNX1-206ENST00000559389 ANKRD36CQ5JPF3 1778 aa27.81■■■□□ 2.04
SNX1-206ENST00000559389 NUP98P52948 1817 aa27.81■■■□□ 2.04
SNX1-206ENST00000559389 ERVV-1B6SEH8 477 aa27.81■■■□□ 2.04
SNX1-206ENST00000559389 AIMP1Q12904 312 aaKnown RBP27.81■■■□□ 2.04
SNX1-206ENST00000559389 NLGN1Q8N2Q7 840 aa27.81■■■□□ 2.04
SNX1-206ENST00000559389 SGIP1Q9BQI5 828 aa27.81■■■□□ 2.04
SNX1-206ENST00000559389 SPON1Q9HCB6 807 aa27.81■■■□□ 2.04
SNX1-206ENST00000559389 ATF5Q9Y2D1 282 aaPredicted RBP27.81■■■□□ 2.04
SNX1-206ENST00000559389 SLC4A2P04920 1241 aa27.8■■■□□ 2.04
SNX1-206ENST00000559389 PTGER2P43116 358 aa27.8■■■□□ 2.04
SNX1-206ENST00000559389 ZBTB3Q9H5J0 574 aa27.8■■■□□ 2.04
SNX1-206ENST00000559389 ZNF652Q9Y2D9 606 aa27.8■■■□□ 2.04
SNX1-206ENST00000559389 ATP10DQ9P241 1426 aa27.8■■■□□ 2.04
SNX1-206ENST00000559389 HLFQ16534 295 aa27.78■■■□□ 2.04
SNX1-206ENST00000559389 ALDH1L2Q3SY69 923 aa27.78■■■□□ 2.04
SNX1-206ENST00000559389 CLEC4GQ6UXB4 293 aa27.78■■■□□ 2.04
SNX1-206ENST00000559389 G2E3Q7L622 706 aa27.78■■■□□ 2.04
SNX1-206ENST00000559389 SSH1Q8WYL5 1049 aa27.78■■■□□ 2.04
SNX1-206ENST00000559389 FLIIQ13045 1269 aa27.77■■■□□ 2.04
SNX1-206ENST00000559389 PLBD2Q8NHP8 589 aa27.77■■■□□ 2.04
SNX1-206ENST00000559389 NRXN2Q9P2S2 1712 aa27.76■■■□□ 2.03
SNX1-206ENST00000559389 MMP10P09238 476 aa27.76■■■□□ 2.03
SNX1-206ENST00000559389 NFIXQ14938 502 aa27.76■■■□□ 2.03
SNX1-206ENST00000559389 TBC1D9BQ66K14 1250 aa27.76■■■□□ 2.03
SNX1-206ENST00000559389 GIGYF2Q6Y7W6 1299 aaKnown RBP27.76■■■□□ 2.03
SNX1-206ENST00000559389 MRPL50Q8N5N7 158 aaKnown RBP27.76■■■□□ 2.03
SNX1-206ENST00000559389 POLD1P28340 1107 aa27.75■■■□□ 2.03
SNX1-206ENST00000559389 BCL2L13Q9BXK5 485 aa27.75■■■□□ 2.03
SNX1-206ENST00000559389 ADCY9O60503 1353 aa27.74■■■□□ 2.03
SNX1-206ENST00000559389 DDX58O95786 925 aaKnown RBP27.74■■■□□ 2.03
SNX1-206ENST00000559389 TM4SF1P30408 202 aa27.74■■■□□ 2.03
SNX1-206ENST00000559389 RARSP54136 660 aaKnown RBP27.74■■■□□ 2.03
SNX1-206ENST00000559389 DDR1Q08345 913 aa27.74■■■□□ 2.03
SNX1-206ENST00000559389 ANKRD13DQ6ZTN6 518 aa27.74■■■□□ 2.03
SNX1-206ENST00000559389 SMC4Q9NTJ3 1288 aa27.74■■■□□ 2.03
SNX1-206ENST00000559389 CARMIL3Q8ND23 1372 aa27.73■■■□□ 2.03
SNX1-206ENST00000559389 AFDNP55196 1824 aaKnown RBP27.71■■■□□ 2.03
SNX1-206ENST00000559389 POLRMTO00411 1230 aaKnown RBP27.71■■■□□ 2.03
SNX1-206ENST00000559389 BRPF1P55201 1214 aaPredicted RBP27.7■■■□□ 2.02
SNX1-206ENST00000559389 FKBP5Q13451 457 aaPredicted RBP27.7■■■□□ 2.02
SNX1-206ENST00000559389 HSP90AB3PQ58FF7 597 aa27.7■■■□□ 2.02
SNX1-206ENST00000559389 KSR2Q6VAB6 950 aa27.7■■■□□ 2.02
SNX1-206ENST00000559389 BICDL1Q6ZP65 573 aa27.7■■■□□ 2.02
SNX1-206ENST00000559389 RIC3Q7Z5B4 369 aa27.7■■■□□ 2.02
SNX1-206ENST00000559389 NIP7Q9Y221 180 aaKnown RBP eCLIP27.69■■■□□ 2.02
SNX1-206ENST00000559389 UBN2Q6ZU65 1347 aa27.68■■■□□ 2.02
SNX1-206ENST00000559389 PI4KAP2A4QPH2 592 aa27.68■■■□□ 2.02
SNX1-206ENST00000559389 ZNF34Q8IZ26 560 aa27.68■■■□□ 2.02
SNX1-206ENST00000559389 PI4KAP1Q8N8J0 262 aa27.68■■■□□ 2.02
SNX1-206ENST00000559389 MAP3K2Q9Y2U5 619 aa27.68■■■□□ 2.02
SNX1-206ENST00000559389 PARP3Q9Y6F1 533 aa27.68■■■□□ 2.02
SNX1-206ENST00000559389 PTPRCP08575 1304 aa27.67■■■□□ 2.02
SNX1-206ENST00000559389 C10orf71Q711Q0 1435 aa27.67■■■□□ 2.02
SNX1-206ENST00000559389 TCIRG1Q13488 830 aa27.67■■■□□ 2.02
SNX1-206ENST00000559389 SETDB2Q96T68 719 aa27.67■■■□□ 2.02
SNX1-206ENST00000559389 IBTKQ9P2D0 1353 aaPredicted RBP27.67■■■□□ 2.02
SNX1-206ENST00000559389 KIF13BQ9NQT8 1826 aa27.67■■■□□ 2.02
SNX1-206ENST00000559389 KIF16BQ96L93 1317 aa27.67■■■□□ 2.02
SNX1-206ENST00000559389 GPTP24298 496 aa27.66■■■□□ 2.02
SNX1-206ENST00000559389 METTL22Q9BUU2 404 aaPredicted RBP27.66■■■□□ 2.02
SNX1-206ENST00000559389 N4BP2Q86UW6 1770 aaPredicted RBP27.65■■■□□ 2.02
SNX1-206ENST00000559389 SERPINB2P05120 415 aa27.64■■■□□ 2.02
SNX1-206ENST00000559389 PARP10Q53GL7 1025 aa27.64■■■□□ 2.02
SNX1-206ENST00000559389 ISCA1Q9BUE6 129 aa27.64■■■□□ 2.02
SNX1-206ENST00000559389 PXDNLA1KZ92 1463 aa27.64■■■□□ 2.01
SNX1-206ENST00000559389 DNAAF4Q8WXU2 420 aa27.63■■■□□ 2.01
SNX1-206ENST00000559389 BCAR3O75815 825 aa27.62■■■□□ 2.01
SNX1-206ENST00000559389 NLRP10Q86W26 655 aa27.62■■■□□ 2.01
SNX1-206ENST00000559389 MYD88Q99836 296 aa27.62■■■□□ 2.01
SNX1-206ENST00000559389 F6X3S4 739 aa27.61■■■□□ 2.01
SNX1-206ENST00000559389 PPP1R1BQ9UD71 204 aaPredicted RBP27.61■■■□□ 2.01
SNX1-206ENST00000559389 ANKRD31Q8N7Z5 1873 aa27.6■■■□□ 2.01
SNX1-206ENST00000559389 ATP5J2-PTCD1G3V325 749 aa27.6■■■□□ 2.01
SNX1-206ENST00000559389 TRIM28Q13263 835 aaKnown RBP27.6■■■□□ 2.01
SNX1-206ENST00000559389 SUSD4Q5VX71 490 aa27.6■■■□□ 2.01
SNX1-206ENST00000559389 NBPF5PQ86XG9 351 aaPredicted RBP27.6■■■□□ 2.01
SNX1-206ENST00000559389 CNBD1Q8NA66 436 aa27.6■■■□□ 2.01
SNX1-206ENST00000559389 NOB1Q9ULX3 412 aaKnown RBP27.6■■■□□ 2.01
SNX1-206ENST00000559389 KIAA1551Q9HCM1 1747 aa27.6■■■□□ 2.01
SNX1-206ENST00000559389 NTSR2O95665 410 aa27.59■■■□□ 2.01
SNX1-206ENST00000559389 NEXNQ0ZGT2 675 aa27.59■■■□□ 2.01
SNX1-206ENST00000559389 PRR5LQ6MZQ0 368 aa27.59■■■□□ 2.01
SNX1-206ENST00000559389 RCAN3Q9UKA8 241 aa27.59■■■□□ 2.01
SNX1-206ENST00000559389 IGKV5-2P06315 115 aa27.58■■■□□ 2.01
SNX1-206ENST00000559389 TNRC6CQ9HCJ0 1690 aaKnown RBP27.58■■■□□ 2.01
SNX1-206ENST00000559389 ABCC12Q96J65 1359 aa27.58■■■□□ 2.01
SNX1-206ENST00000559389 PPP1R42Q7Z4L9 355 aa27.57■■■□□ 2
SNX1-206ENST00000559389 NYXQ9GZU5 481 aa27.57■■■□□ 2
SNX1-206ENST00000559389 RNF123Q5XPI4 1314 aa27.57■■■□□ 2
SNX1-206ENST00000559389 LAMB2P55268 1798 aa27.57■■■□□ 2
SNX1-206ENST00000559389 RIC1Q4ADV7 1423 aa27.57■■■□□ 2
SNX1-206ENST00000559389 FAM177BA6PVY3 158 aa27.56■■■□□ 2
SNX1-206ENST00000559389 CCDC191Q8NCU4 936 aa27.56■■■□□ 2
SNX1-206ENST00000559389 LINS1Q8NG48 757 aa27.56■■■□□ 2
SNX1-206ENST00000559389 ARHGAP45Q92619 1136 aa27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms