RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 USP44Q9H0E7 712 aa12.77□□□□□ -0.37
NEK9-205ENST00000555405 PKD1L3Q7Z443 1732 aa12.77□□□□□ -0.37
NEK9-205ENST00000555405 PELP1Q8IZL8 1130 aaKnown RBP12.77□□□□□ -0.37
NEK9-205ENST00000555405 CHMP4BQ9H444 224 aaKnown RBP12.77□□□□□ -0.37
NEK9-205ENST00000555405 ADCY9O60503 1353 aa12.77□□□□□ -0.37
NEK9-205ENST00000555405 GNAI3P08754 354 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 EN1Q05925 392 aaPredicted RBP12.76□□□□□ -0.37
NEK9-205ENST00000555405 PLBD2Q8NHP8 589 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 METTL22Q9BUU2 404 aaPredicted RBP12.76□□□□□ -0.37
NEK9-205ENST00000555405 SRP68Q9UHB9 627 aaKnown RBP12.76□□□□□ -0.37
NEK9-205ENST00000555405 OS9Q13438 667 aaPredicted RBP12.76□□□□□ -0.37
NEK9-205ENST00000555405 ANKRD45Q5TZF3 282 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 DEFB132Q7Z7B7 95 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 SYNE4Q8N205 404 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 LINS1Q8NG48 757 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 LRRC4BQ9NT99 713 aa12.76□□□□□ -0.37
NEK9-205ENST00000555405 IGKV5-2P06315 115 aa12.75□□□□□ -0.37
NEK9-205ENST00000555405 INTS5Q6P9B9 1019 aaKnown RBP12.75□□□□□ -0.37
NEK9-205ENST00000555405 FAM89AQ96GI7 184 aa12.75□□□□□ -0.37
NEK9-205ENST00000555405 RTCBQ9Y3I0 505 aaKnown RBP12.75□□□□□ -0.37
NEK9-205ENST00000555405 TXNRD1Q16881 649 aa12.75□□□□□ -0.37
NEK9-205ENST00000555405 LNPKQ9C0E8 428 aa12.75□□□□□ -0.37
NEK9-205ENST00000555405 TFCP2L1Q9NZI6 479 aa12.75□□□□□ -0.37
NEK9-205ENST00000555405 EXOC6BQ9Y2D4 811 aa12.75□□□□□ -0.37
NEK9-205ENST00000555405 SIL1Q9H173 461 aa12.74□□□□□ -0.37
NEK9-205ENST00000555405 ZPR1O75312 459 aa12.74□□□□□ -0.37
NEK9-205ENST00000555405 RFC4P35249 363 aa12.74□□□□□ -0.37
NEK9-205ENST00000555405 NEURL1BA8MQ27 555 aa12.73□□□□□ -0.37
NEK9-205ENST00000555405 GRM8O00222 908 aa12.73□□□□□ -0.37
NEK9-205ENST00000555405 SRGAP3O43295 1099 aa12.73□□□□□ -0.37
NEK9-205ENST00000555405 TRMT112Q9UI30 125 aaKnown RBP12.73□□□□□ -0.37
NEK9-205ENST00000555405 NIP7Q9Y221 180 aaKnown RBP eCLIP12.73□□□□□ -0.37
NEK9-205ENST00000555405 LRRC37A3O60309 1634 aa12.73□□□□□ -0.37
NEK9-205ENST00000555405 SMARCA5O60264 1052 aaPredicted RBP12.73□□□□□ -0.37
NEK9-205ENST00000555405 USPL1Q5W0Q7 1092 aa12.73□□□□□ -0.37
NEK9-205ENST00000555405 CWC25Q9NXE8 425 aaPredicted RBP12.73□□□□□ -0.37
NEK9-205ENST00000555405 PLEKHG2Q9H7P9 1386 aa12.73□□□□□ -0.37
NEK9-205ENST00000555405 PNMA6EA0A0J9YXQ4 647 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 IL6STP40189 918 aaPredicted RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 GCKRQ14397 625 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 CENPQQ7L2Z9 268 aaPredicted RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 KLHDC4Q8TBB5 520 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 SUCLG2Q96I99 432 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 VIRMAQ69YN4 1812 aaKnown RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 LRP10Q7Z4F1 713 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 PPP1R42Q7Z4L9 355 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 AMIGO3Q86WK7 504 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 SURF6O75683 361 aaKnown RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 EZH2Q15910 746 aaKnown RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 TRAPPC3LQ5T215 181 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 SIRT2Q8IXJ6 389 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 DOT1LQ8TEK3 1739 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
NEK9-205ENST00000555405 PA2G4Q9UQ80 394 aaKnown RBP12.72□□□□□ -0.37
NEK9-205ENST00000555405 TOGARAM1Q9Y4F4 1720 aa12.71□□□□□ -0.37
NEK9-205ENST00000555405 RGS12O14924 1447 aa12.71□□□□□ -0.37
NEK9-205ENST00000555405 MAP3K15Q6ZN16 1313 aa12.71□□□□□ -0.37
NEK9-205ENST00000555405 EIF5P55010 431 aaKnown RBP12.71□□□□□ -0.37
NEK9-205ENST00000555405 TCIRG1Q13488 830 aa12.71□□□□□ -0.37
NEK9-205ENST00000555405 CEP85Q6P2H3 762 aa12.71□□□□□ -0.37
NEK9-205ENST00000555405 MRC1P22897 1456 aa12.71□□□□□ -0.37
NEK9-205ENST00000555405 BICC1Q9H694 974 aaKnown RBP12.71□□□□□ -0.38
NEK9-205ENST00000555405 SHANK3Q9BYB0 1731 aa12.71□□□□□ -0.38
NEK9-205ENST00000555405 ERBB4Q15303 1308 aa12.71□□□□□ -0.38
NEK9-205ENST00000555405 HMMRO75330 724 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 HCLS1P14317 486 aaPredicted RBP12.7□□□□□ -0.38
NEK9-205ENST00000555405 ARHGEF1Q92888 912 aaKnown RBP12.7□□□□□ -0.38
NEK9-205ENST00000555405 KCPQ6ZWJ8 1503 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 ALDH1L1O75891 902 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 GIGYF2Q6Y7W6 1299 aaKnown RBP12.7□□□□□ -0.38
NEK9-205ENST00000555405 PROM2Q8N271 834 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 IL1RAPL2Q9NP60 686 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 ITGB4P16144 1822 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 MSL1Q68DK7 614 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 KDM3BQ7LBC6 1761 aa12.7□□□□□ -0.38
NEK9-205ENST00000555405 EPHA10Q5JZY3 1008 aa12.69□□□□□ -0.38
NEK9-205ENST00000555405 LMBR1LQ6UX01 489 aa12.69□□□□□ -0.38
NEK9-205ENST00000555405 TAF7LQ5H9L4 462 aa12.69□□□□□ -0.38
NEK9-205ENST00000555405 RPS6KA4O75676 772 aa12.69□□□□□ -0.38
NEK9-205ENST00000555405 RPAP2Q8IXW5 612 aaPredicted RBP12.68□□□□□ -0.38
NEK9-205ENST00000555405 ANKRD44Q8N8A2 993 aa12.68□□□□□ -0.38
NEK9-205ENST00000555405 C16orf71Q8IYS4 520 aaPredicted RBP12.67□□□□□ -0.38
NEK9-205ENST00000555405 COL15A1P39059 1388 aa12.67□□□□□ -0.38
NEK9-205ENST00000555405 ZNF652Q9Y2D9 606 aa12.67□□□□□ -0.38
NEK9-205ENST00000555405 ATP8B2P98198 1209 aa12.67□□□□□ -0.38
NEK9-205ENST00000555405 SUSD4Q5VX71 490 aa12.67□□□□□ -0.38
NEK9-205ENST00000555405 ZNF594Q96JF6 807 aaPredicted RBP12.67□□□□□ -0.38
NEK9-205ENST00000555405 HSP90AB3PQ58FF7 597 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 NLRP10Q86W26 655 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 CCDC191Q8NCU4 936 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 SETDB2Q96T68 719 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 C5P01031 1676 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 IRS4O14654 1257 aaPredicted RBP12.66□□□□□ -0.38
NEK9-205ENST00000555405 CAMTA2O94983 1202 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 BAG6P46379 1132 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 TBC1D9BQ66K14 1250 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 TSHZ3Q63HK5 1081 aa12.66□□□□□ -0.38
NEK9-205ENST00000555405 NBPF5PQ86XG9 351 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms