RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 KDM2BQ8NHM5 1336 aa8.76□□□□□ -1.01
SLIRP-203ENST00000554074 PRAMEF22A3QJZ6 481 aa8.75□□□□□ -1.01
SLIRP-203ENST00000554074 NBPF26B4DH59 902 aa8.75□□□□□ -1.01
SLIRP-203ENST00000554074 NBPF10Q6P3W6 841 aaKnown RBP8.75□□□□□ -1.01
SLIRP-203ENST00000554074 NBPF15Q8N660 670 aa8.75□□□□□ -1.01
SLIRP-203ENST00000554074 CNBD1Q8NA66 436 aa8.75□□□□□ -1.01
SLIRP-203ENST00000554074 RNF181Q9P0P0 153 aa8.75□□□□□ -1.01
SLIRP-203ENST00000554074 ANKRD36CQ5JPF3 1778 aa8.75□□□□□ -1.01
SLIRP-203ENST00000554074 LMNB1P20700 586 aa8.74□□□□□ -1.01
SLIRP-203ENST00000554074 ST5P78524 1137 aa8.74□□□□□ -1.01
SLIRP-203ENST00000554074 STYK1Q6J9G0 422 aa8.74□□□□□ -1.01
SLIRP-203ENST00000554074 RBM46Q8TBY0 533 aaKnown RBP8.74□□□□□ -1.01
SLIRP-203ENST00000554074 NMRK2Q9NPI5 230 aa8.74□□□□□ -1.01
SLIRP-203ENST00000554074 LTBP3Q9NS15 1303 aa8.74□□□□□ -1.01
SLIRP-203ENST00000554074 MAPK8IP3Q9UPT6 1336 aa8.74□□□□□ -1.01
SLIRP-203ENST00000554074 SCN4AP35499 1836 aa8.73□□□□□ -1.01
SLIRP-203ENST00000554074 KLRG2A4D1S0 409 aaPredicted RBP8.73□□□□□ -1.01
SLIRP-203ENST00000554074 SRGNP10124 158 aa8.73□□□□□ -1.01
SLIRP-203ENST00000554074 EIF4A1P60842 406 aaKnown RBP8.73□□□□□ -1.01
SLIRP-203ENST00000554074 CNKSR1Q969H4 720 aa8.73□□□□□ -1.01
SLIRP-203ENST00000554074 BABAM1Q9NWV8 329 aa8.73□□□□□ -1.01
SLIRP-203ENST00000554074 ERBB4Q15303 1308 aa8.73□□□□□ -1.01
SLIRP-203ENST00000554074 ERVV-1B6SEH8 477 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 NFKBIEO00221 500 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 NPHP1O15259 732 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 PIP4K2AP48426 406 aaPredicted RBP8.72□□□□□ -1.01
SLIRP-203ENST00000554074 APLP1P51693 650 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 RASSF7Q02833 373 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 LMOD3Q0VAK6 560 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 FSTL1Q12841 308 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 SOGA3Q5TF21 947 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 TPTE2Q6XPS3 522 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 NBPF5PQ86XG9 351 aaPredicted RBP8.72□□□□□ -1.01
SLIRP-203ENST00000554074 ZNF622Q969S3 477 aaKnown RBP eCLIP8.72□□□□□ -1.01
SLIRP-203ENST00000554074 MASTLQ96GX5 879 aa8.72□□□□□ -1.01
SLIRP-203ENST00000554074 MYBBP1AQ9BQG0 1328 aaKnown RBP8.72□□□□□ -1.01
SLIRP-203ENST00000554074 IBTKQ9P2D0 1353 aaPredicted RBP8.72□□□□□ -1.01
SLIRP-203ENST00000554074 RIC1Q4ADV7 1423 aa8.71□□□□□ -1.01
SLIRP-203ENST00000554074 GLTPD2A6NH11 291 aa8.71□□□□□ -1.02
SLIRP-203ENST00000554074 PRELPP51888 382 aa8.71□□□□□ -1.02
SLIRP-203ENST00000554074 C16orf71Q8IYS4 520 aaPredicted RBP8.71□□□□□ -1.02
SLIRP-203ENST00000554074 MIS18AQ9NYP9 233 aa8.71□□□□□ -1.02
SLIRP-203ENST00000554074 NIP7Q9Y221 180 aaKnown RBP eCLIP8.71□□□□□ -1.02
SLIRP-203ENST00000554074 MAP3K15Q6ZN16 1313 aa8.71□□□□□ -1.02
SLIRP-203ENST00000554074 LAMB2P55268 1798 aa8.71□□□□□ -1.02
SLIRP-203ENST00000554074 C21orf2O43822 256 aa8.7□□□□□ -1.02
SLIRP-203ENST00000554074 NPR1P16066 1061 aa8.7□□□□□ -1.02
SLIRP-203ENST00000554074 TMPOP42166 694 aaKnown RBP8.7□□□□□ -1.02
SLIRP-203ENST00000554074 PRPF40BQ6NWY9 871 aaKnown RBP8.7□□□□□ -1.02
SLIRP-203ENST00000554074 CCDC24Q8N4L8 307 aa8.7□□□□□ -1.02
SLIRP-203ENST00000554074 THUMPD2Q9BTF0 503 aaKnown RBP8.7□□□□□ -1.02
SLIRP-203ENST00000554074 TAOK3Q9H2K8 898 aa8.7□□□□□ -1.02
SLIRP-203ENST00000554074 VEGFAP15692 232 aaPredicted RBP8.69□□□□□ -1.02
SLIRP-203ENST00000554074 RIPK4P57078 832 aa8.69□□□□□ -1.02
SLIRP-203ENST00000554074 DDX10Q13206 875 aaKnown RBP8.69□□□□□ -1.02
SLIRP-203ENST00000554074 HLFQ16534 295 aa8.69□□□□□ -1.02
SLIRP-203ENST00000554074 KIF6Q6ZMV9 814 aa8.69□□□□□ -1.02
SLIRP-203ENST00000554074 C7orf43Q8WVR3 580 aa8.69□□□□□ -1.02
SLIRP-203ENST00000554074 NYXQ9GZU5 481 aa8.69□□□□□ -1.02
SLIRP-203ENST00000554074 RRAGCQ9HB90 399 aa8.69□□□□□ -1.02
SLIRP-203ENST00000554074 CAPN15O75808 1086 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 ALDH1B1P30837 517 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 CRY2Q49AN0 593 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 CCDC93Q567U6 631 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 DPY19L2Q6NUT2 758 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 LRP10Q7Z4F1 713 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 SMC1BQ8NDV3 1235 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 TSPYL4Q9UJ04 414 aa8.68□□□□□ -1.02
SLIRP-203ENST00000554074 CACNA1FO60840 1977 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 ERFEQ4G0M1 354 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 GIGYF2Q6Y7W6 1299 aaKnown RBP8.67□□□□□ -1.02
SLIRP-203ENST00000554074 TTLL7Q6ZT98 887 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 ZNF34Q8IZ26 560 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 RTKN2Q8IZC4 609 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 DNAJC5GQ8N7S2 189 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 SNED1Q8TER0 1413 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 RUNDC1Q96C34 613 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 ABCC12Q96J65 1359 aa8.67□□□□□ -1.02
SLIRP-203ENST00000554074 RRP7AQ9Y3A4 280 aaKnown RBP8.67□□□□□ -1.02
SLIRP-203ENST00000554074 RNF123Q5XPI4 1314 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 UBN2Q6ZU65 1347 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 POTECB2RU33 542 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 CHL1O00533 1208 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 MYL6BP14649 208 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 GTF2E1P29083 439 aaPredicted RBP8.66□□□□□ -1.02
SLIRP-203ENST00000554074 HOXA10P31260 410 aaPredicted RBP8.66□□□□□ -1.02
SLIRP-203ENST00000554074 FKBP4Q02790 459 aaKnown RBP eCLIP8.66□□□□□ -1.02
SLIRP-203ENST00000554074 WDR43Q15061 677 aaKnown RBP eCLIP8.66□□□□□ -1.02
SLIRP-203ENST00000554074 PDIA6Q15084 440 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 GRIPAP1Q4V328 841 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 PARP10Q53GL7 1025 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 CC2D2BQ6DHV5 1058 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 NGEFQ8N5V2 710 aa8.66□□□□□ -1.02
SLIRP-203ENST00000554074 ZNF219Q9P2Y4 722 aaPredicted RBP8.66□□□□□ -1.02
SLIRP-203ENST00000554074 NTSR2O95665 410 aa8.65□□□□□ -1.02
SLIRP-203ENST00000554074 HOXB7P09629 217 aa8.65□□□□□ -1.02
SLIRP-203ENST00000554074 PPP1R42Q7Z4L9 355 aa8.65□□□□□ -1.02
SLIRP-203ENST00000554074 L3MBTL3Q96JM7 780 aaPredicted RBP8.65□□□□□ -1.02
SLIRP-203ENST00000554074 PSMD1Q99460 953 aa8.65□□□□□ -1.02
SLIRP-203ENST00000554074 ZBTB3Q9H5J0 574 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms