RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CFAP44Q96MT7 982 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 PIM2Q9P1W9 311 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 MYL6BP14649 208 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 CCDC24Q8N4L8 307 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 NGEFQ8N5V2 710 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 MRS2Q9HD23 443 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 NRXN2Q9P2S2 1712 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 ZNF652Q9Y2D9 606 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 LAS1LQ9Y4W2 734 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 SCN7AQ01118 1682 aa13.43□□□□□ -0.26
CCDC88C-206ENST00000553437 ERVV-1B6SEH8 477 aa13.42□□□□□ -0.26
CCDC88C-206ENST00000553437 EIF2S2P20042 333 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-206ENST00000553437 PROSER3Q2NL68 480 aa13.42□□□□□ -0.26
CCDC88C-206ENST00000553437 DALRD3Q5D0E6 543 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-206ENST00000553437 BRIP1Q9BX63 1249 aa13.42□□□□□ -0.26
CCDC88C-206ENST00000553437 MAP3K15Q6ZN16 1313 aa13.41□□□□□ -0.26
CCDC88C-206ENST00000553437 C2CD5Q86YS7 1000 aa13.41□□□□□ -0.26
CCDC88C-206ENST00000553437 CNBD1Q8NA66 436 aa13.41□□□□□ -0.26
CCDC88C-206ENST00000553437 MBIPQ9NS73 344 aa13.41□□□□□ -0.26
CCDC88C-206ENST00000553437 IFT57Q9NWB7 429 aa13.41□□□□□ -0.26
CCDC88C-206ENST00000553437 H0YIN7 160 aa13.4□□□□□ -0.26
CCDC88C-206ENST00000553437 ANXA1P04083 346 aa13.4□□□□□ -0.26
CCDC88C-206ENST00000553437 NECTIN2Q92692 538 aa13.4□□□□□ -0.26
CCDC88C-206ENST00000553437 NIP7Q9Y221 180 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC88C-206ENST00000553437 N4BP2Q86UW6 1770 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-206ENST00000553437 HOXB7P09629 217 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 PDE6BP35913 854 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 GNAI1P63096 354 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 CALD1Q05682 793 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 CCDC27Q2M243 656 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 KIF6Q6ZMV9 814 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 ARHGAP27Q6ZUM4 889 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 NBPF5PQ86XG9 351 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 PDZRN3Q9UPQ7 1066 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 ADCY9O60503 1353 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 LAMB4A4D0S4 1761 aa13.39□□□□□ -0.27
CCDC88C-206ENST00000553437 KLRG2A4D1S0 409 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 ST5P78524 1137 aa13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 NCBP3Q53F19 620 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 DUSP27Q5VZP5 1158 aa13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 TPTE2Q6XPS3 522 aa13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 TTLL6Q8N841 843 aa13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 ZBTB3Q9H5J0 574 aa13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 DDX21Q9NR30 783 aaKnown RBP eCLIP13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 ATP10DQ9P241 1426 aa13.38□□□□□ -0.27
CCDC88C-206ENST00000553437 BCORQ6W2J9 1755 aa13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 AFDNP55196 1824 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 SRGNP10124 158 aa13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 GIGYF2Q6Y7W6 1299 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 COPS6Q7L5N1 327 aa13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 WWC1Q8IX03 1113 aa13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 ZNF34Q8IZ26 560 aa13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 UBN2Q6ZU65 1347 aa13.37□□□□□ -0.27
CCDC88C-206ENST00000553437 FAM177BA6PVY3 158 aa13.36□□□□□ -0.27
CCDC88C-206ENST00000553437 NPHP1O15259 732 aa13.36□□□□□ -0.27
CCDC88C-206ENST00000553437 HDGFL1Q5TGJ6 251 aa13.36□□□□□ -0.27
CCDC88C-206ENST00000553437 XAGE3Q8WTP9 111 aa13.36□□□□□ -0.27
CCDC88C-206ENST00000553437 CHPF2Q9P2E5 772 aa13.36□□□□□ -0.27
CCDC88C-206ENST00000553437 GPTP24298 496 aa13.35□□□□□ -0.27
CCDC88C-206ENST00000553437 SUSD4Q5VX71 490 aa13.35□□□□□ -0.27
CCDC88C-206ENST00000553437 STYK1Q6J9G0 422 aa13.35□□□□□ -0.27
CCDC88C-206ENST00000553437 C8orf58Q8NAV2 365 aa13.35□□□□□ -0.27
CCDC88C-206ENST00000553437 ZNF622Q969S3 477 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCDC88C-206ENST00000553437 DBF4Q9UBU7 674 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-206ENST00000553437 BRCA1P38398 1863 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-206ENST00000553437 AIMP1Q12904 312 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-206ENST00000553437 C9orf131Q5VYM1 1079 aa13.34□□□□□ -0.27
CCDC88C-206ENST00000553437 MASTLQ96GX5 879 aa13.34□□□□□ -0.27
CCDC88C-206ENST00000553437 ABCC12Q96J65 1359 aa13.33□□□□□ -0.27
CCDC88C-206ENST00000553437 IBTKQ9P2D0 1353 aaPredicted RBP13.33□□□□□ -0.27
CCDC88C-206ENST00000553437 ELL2O00472 640 aaPredicted RBP13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 NTSR2O95665 410 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 DSG3P32926 999 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 PRELPP51888 382 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 ERFEQ4G0M1 354 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 NUTM1Q86Y26 1132 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 TSPYL6Q8N831 410 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 TSR2Q969E8 191 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 CNKSR1Q969H4 720 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 NYXQ9GZU5 481 aa13.33□□□□□ -0.28
CCDC88C-206ENST00000553437 ANKRD31Q8N7Z5 1873 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 NPR1P16066 1061 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 TCIRG1Q13488 830 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 PARP10Q53GL7 1025 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 PRPF40BQ6NWY9 871 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 FAM9BQ8IZU0 186 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 C7orf43Q8WVR3 580 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 HYPKQ9NX55 129 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 IL16Q14005 1332 aa13.32□□□□□ -0.28
CCDC88C-206ENST00000553437 NFKBIEO00221 500 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 C21orf2O43822 256 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 GTF2E1P29083 439 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 RASSF7Q02833 373 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 CRY2Q49AN0 593 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 HSP90AB3PQ58FF7 597 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 ANKRD13DQ6ZTN6 518 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 NLRP10Q86W26 655 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 PLBD2Q8NHP8 589 aa13.31□□□□□ -0.28
CCDC88C-206ENST00000553437 SLC10A5Q5PT55 438 aa13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 PPP1R42Q7Z4L9 355 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms