RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SURF6O75683 361 aaKnown RBP32.5■■■□□ 2.79
CCDC88C-205ENST00000553403 NEURL1BA8MQ27 555 aa32.49■■■□□ 2.79
CCDC88C-205ENST00000553403 RBM25P49756 843 aaKnown RBP32.49■■■□□ 2.79
CCDC88C-205ENST00000553403 STAP2Q9UGK3 403 aa32.48■■■□□ 2.79
CCDC88C-205ENST00000553403 WNK3Q9BYP7 1800 aa32.48■■■□□ 2.79
CCDC88C-205ENST00000553403 BCL11AQ9H165 835 aa32.47■■■□□ 2.79
CCDC88C-205ENST00000553403 SDSP20132 328 aa32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 RBM6P78332 1123 aaKnown RBP32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 PLBD2Q8NHP8 589 aa32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 KIF1BPQ96EK5 621 aa32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 MYD88Q99836 296 aa32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 AOX1Q06278 1338 aa32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 CDCA7Q9BWT1 371 aaPredicted RBP32.46■■■□□ 2.79
CCDC88C-205ENST00000553403 MX1P20591 662 aa32.45■■■□□ 2.79
CCDC88C-205ENST00000553403 SLC4A3P48751 1232 aa32.45■■■□□ 2.79
CCDC88C-205ENST00000553403 GCKRQ14397 625 aa32.45■■■□□ 2.79
CCDC88C-205ENST00000553403 SUCLG2Q96I99 432 aa32.45■■■□□ 2.79
CCDC88C-205ENST00000553403 NRAPQ86VF7 1730 aa32.45■■■□□ 2.78
CCDC88C-205ENST00000553403 NBPF26B4DH59 902 aa32.44■■■□□ 2.78
CCDC88C-205ENST00000553403 NBPF14Q5TI25 921 aa32.44■■■□□ 2.78
CCDC88C-205ENST00000553403 NBPF10Q6P3W6 841 aaKnown RBP32.44■■■□□ 2.78
CCDC88C-205ENST00000553403 NBPF15Q8N660 670 aa32.44■■■□□ 2.78
CCDC88C-205ENST00000553403 RHPN1Q8TCX5 695 aa32.44■■■□□ 2.78
CCDC88C-205ENST00000553403 ARFGEF2Q9Y6D5 1785 aa32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 EXOC5O00471 708 aa32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 THRAP3Q9Y2W1 955 aaKnown RBP32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 PIP4K2AP48426 406 aaPredicted RBP32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 CASC1Q6TDU7 716 aa32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 VSIG10Q8N0Z9 540 aa32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 FNBP4Q8N3X1 1017 aaPredicted RBP32.43■■■□□ 2.78
CCDC88C-205ENST00000553403 PTCD1O75127 700 aaKnown RBP32.42■■■□□ 2.78
CCDC88C-205ENST00000553403 TRPC5Q9UL62 973 aaPredicted RBP32.42■■■□□ 2.78
CCDC88C-205ENST00000553403 PIGBQ92521 554 aa32.41■■■□□ 2.78
CCDC88C-205ENST00000553403 KAZALD1Q96I82 304 aa32.41■■■□□ 2.78
CCDC88C-205ENST00000553403 TEX13AQ9BXU3 409 aaPredicted RBP32.41■■■□□ 2.78
CCDC88C-205ENST00000553403 COL15A1P39059 1388 aa32.4■■■□□ 2.78
CCDC88C-205ENST00000553403 ERC1Q8IUD2 1116 aa32.39■■■□□ 2.78
CCDC88C-205ENST00000553403 ITGB4P16144 1822 aa32.39■■■□□ 2.78
CCDC88C-205ENST00000553403 SPATA31A1Q5TZJ5 1347 aa32.38■■■□□ 2.77
CCDC88C-205ENST00000553403 BICC1Q9H694 974 aaKnown RBP32.38■■■□□ 2.77
CCDC88C-205ENST00000553403 A1BGP04217 495 aa32.37■■■□□ 2.77
CCDC88C-205ENST00000553403 IL1RAPL2Q9NP60 686 aa32.37■■■□□ 2.77
CCDC88C-205ENST00000553403 TUBGCP6Q96RT7 1819 aa32.37■■■□□ 2.77
CCDC88C-205ENST00000553403 ATG3Q9NT62 314 aa32.37■■■□□ 2.77
CCDC88C-205ENST00000553403 BCL9O00512 1426 aa32.36■■■□□ 2.77
CCDC88C-205ENST00000553403 NWD2Q9ULI1 1742 aa32.36■■■□□ 2.77
CCDC88C-205ENST00000553403 AFDNP55196 1824 aaKnown RBP32.35■■■□□ 2.77
CCDC88C-205ENST00000553403 ASAP1Q9ULH1 1129 aa32.35■■■□□ 2.77
CCDC88C-205ENST00000553403 NUP188Q5SRE5 1749 aa32.35■■■□□ 2.77
CCDC88C-205ENST00000553403 OS9Q13438 667 aaPredicted RBP32.34■■■□□ 2.77
CCDC88C-205ENST00000553403 TBC1D2Q9BYX2 928 aa32.34■■■□□ 2.77
CCDC88C-205ENST00000553403 SLIT2O94813 1529 aa32.32■■■□□ 2.76
CCDC88C-205ENST00000553403 TTLL7Q6ZT98 887 aa32.32■■■□□ 2.76
CCDC88C-205ENST00000553403 USP42Q9H9J4 1324 aaKnown RBP32.32■■■□□ 2.76
CCDC88C-205ENST00000553403 NUTM1Q86Y26 1132 aa32.31■■■□□ 2.76
CCDC88C-205ENST00000553403 SPATA31A5Q5VU36 1347 aa32.3■■■□□ 2.76
CCDC88C-205ENST00000553403 SPATA31A7Q8IWB4 1347 aa32.3■■■□□ 2.76
CCDC88C-205ENST00000553403 TSHZ3Q63HK5 1081 aa32.3■■■□□ 2.76
CCDC88C-205ENST00000553403 STARD3NLO95772 234 aa32.29■■■□□ 2.76
CCDC88C-205ENST00000553403 CLASRPQ8N2M8 674 aaKnown RBP32.29■■■□□ 2.76
CCDC88C-205ENST00000553403 ATRNO75882 1429 aa32.28■■■□□ 2.76
CCDC88C-205ENST00000553403 ATP5J2-PTCD1G3V325 749 aa32.28■■■□□ 2.76
CCDC88C-205ENST00000553403 CASP7P55210 303 aa32.28■■■□□ 2.76
CCDC88C-205ENST00000553403 RABL6Q3YEC7 729 aaPredicted RBP32.28■■■□□ 2.76
CCDC88C-205ENST00000553403 DNAJC10Q8IXB1 793 aa32.28■■■□□ 2.76
CCDC88C-205ENST00000553403 PA2G4Q9UQ80 394 aaKnown RBP32.28■■■□□ 2.76
CCDC88C-205ENST00000553403 A0A087WZG4 1122 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 G3BP1Q13283 466 aaKnown RBP eCLIP32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 UNC5CLQ8IV45 518 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 SNX21Q969T3 373 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 BCL9LQ86UU0 1499 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 TTC41PQ6P2S7 1318 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 REC8O95072 547 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 DDB1Q16531 1140 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 EPHA10Q5JZY3 1008 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 BARGINQ6ZT62 677 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 USP26Q9BXU7 913 aa32.27■■■□□ 2.76
CCDC88C-205ENST00000553403 H7C1W4 665 aa32.26■■■□□ 2.75
CCDC88C-205ENST00000553403 ERC2O15083 957 aa32.26■■■□□ 2.75
CCDC88C-205ENST00000553403 PI4K2BQ8TCG2 481 aa32.26■■■□□ 2.75
CCDC88C-205ENST00000553403 KIF2CQ99661 725 aa32.26■■■□□ 2.75
CCDC88C-205ENST00000553403 RBM42Q9BTD8 480 aaKnown RBP32.26■■■□□ 2.75
CCDC88C-205ENST00000553403 CWC25Q9NXE8 425 aaPredicted RBP32.26■■■□□ 2.75
CCDC88C-205ENST00000553403 UBE3BQ7Z3V4 1068 aa32.25■■■□□ 2.75
CCDC88C-205ENST00000553403 CCDC191Q8NCU4 936 aa32.24■■■□□ 2.75
CCDC88C-205ENST00000553403 TRIM6-TRIM34B2RNG4 842 aa32.23■■■□□ 2.75
CCDC88C-205ENST00000553403 GJD4Q96KN9 370 aaPredicted RBP32.23■■■□□ 2.75
CCDC88C-205ENST00000553403 COPRSQ9NQ92 184 aa32.23■■■□□ 2.75
CCDC88C-205ENST00000553403 HSCBQ8IWL3 235 aa32.22■■■□□ 2.75
CCDC88C-205ENST00000553403 DOT1LQ8TEK3 1739 aa32.22■■■□□ 2.75
CCDC88C-205ENST00000553403 UPF1Q92900 1129 aaKnown RBP eCLIP32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 RILPL2Q969X0 211 aa32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 ZBTB3Q9H5J0 574 aa32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 SASH1O94885 1247 aa32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 CHMLP26374 656 aa32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 PRIM1P49642 420 aaKnown RBP32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 GPATCH3Q96I76 525 aa32.21■■■□□ 2.75
CCDC88C-205ENST00000553403 GLRX3O76003 335 aaKnown RBP32.2■■■□□ 2.74
CCDC88C-205ENST00000553403 RFX5P48382 616 aaPredicted RBP32.2■■■□□ 2.74
CCDC88C-205ENST00000553403 ISCA1Q9BUE6 129 aa32.2■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms