RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TFIP11Q9UBB9 837 aaKnown RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 STAP2Q9UGK3 403 aa5.8□□□□□ -1.48
LIMA1-214ENST00000552783 CLTCQ00610 1675 aaKnown RBP5.8□□□□□ -1.48
LIMA1-214ENST00000552783 NEO1Q92859 1461 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 CDK12Q9NYV4 1490 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-214ENST00000552783 PREX1Q8TCU6 1659 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 SGSM2O43147 1006 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 TNNT1P13805 278 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 ATP8B2P98198 1209 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 ME3Q16798 604 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 ANO6Q4KMQ2 910 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 ZSCAN25Q6NSZ9 544 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 ZNF592Q92610 1267 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 USP44Q9H0E7 712 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 DIAPH3Q9NSV4 1193 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 LIMCH1Q9UPQ0 1083 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 SMC3Q9UQE7 1217 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 RIMS1Q86UR5 1692 aaKnown RBP5.79□□□□□ -1.48
LIMA1-214ENST00000552783 RAD50Q92878 1312 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 NPHP1O15259 732 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 TYRO3Q06418 890 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 KMT5BQ4FZB7 885 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 LRRN4CLQ8ND94 238 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 DDX41Q9UJV9 622 aaKnown RBP5.79□□□□□ -1.48
LIMA1-214ENST00000552783 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-214ENST00000552783 ERBB3P21860 1342 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 MTHFSDQ2M296 383 aaKnown RBP5.79□□□□□ -1.48
LIMA1-214ENST00000552783 USHBP1Q8N6Y0 703 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 DACT1Q9NYF0 836 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 OGFRQ9NZT2 677 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 TPCN1Q9ULQ1 816 aa5.79□□□□□ -1.48
LIMA1-214ENST00000552783 SOS1Q07889 1333 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ATP7BP35670 1465 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 FLIIQ13045 1269 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 KIF18AQ8NI77 898 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 FAM200AQ8TCP9 573 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ZNF215Q9UL58 517 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 NR1I2O75469 434 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 CCDC192P0DO97 292 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 RBM6P78332 1123 aaKnown RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 CHAF1AQ13111 956 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 PRPF40BQ6NWY9 871 aaKnown RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 DRC7Q8IY82 874 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 JAKMIP1Q96N16 626 aaKnown RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 DNAJC25Q9H1X3 360 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 PHAXQ9H814 394 aaKnown RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 TAOK2Q9UL54 1235 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ALKQ9UM73 1620 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ACEP12821 1306 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ERICH4A6NGS2 130 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 SURF6O75683 361 aaKnown RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 CCT4P50991 539 aaKnown RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 PPP1R42Q7Z4L9 355 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 PLA2G4DQ86XP0 818 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ERCC4Q92889 916 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-214ENST00000552783 TRIM5Q9C035 493 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 ZNF446Q9NWS9 450 aa5.78□□□□□ -1.48
LIMA1-214ENST00000552783 MAP3K19Q56UN5 1328 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 NBPF7P0C2Y1 421 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-214ENST00000552783 KCNJ4P48050 445 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 ZNF75DP51815 510 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 TERF2Q15554 542 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 FBXO38Q6PIJ6 1188 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 ABTB2Q8N961 1025 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 DDX11Q96FC9 970 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 PGBD1Q96JS3 809 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 TRERF1Q96PN7 1200 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 TRMT1Q9NXH9 659 aaKnown RBP5.77□□□□□ -1.49
LIMA1-214ENST00000552783 SSH2Q76I76 1423 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 PRR36Q9H6K5 1346 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 IRX5P78411 483 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-214ENST00000552783 MAP3K11Q16584 847 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 FEZ1Q99689 392 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 MORC2Q9Y6X9 1032 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-214ENST00000552783 TMEM131LA2VDJ0 1609 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 AATKQ6ZMQ8 1374 aa5.77□□□□□ -1.49
LIMA1-214ENST00000552783 EDC4Q6P2E9 1401 aaKnown RBP5.77□□□□□ -1.49
LIMA1-214ENST00000552783 SMTNL1A8MU46 457 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 PPFIA3O75145 1194 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 ELF2Q15723 593 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 TPD52L1Q16890 204 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 FTOQ9C0B1 505 aaKnown RBP eCLIP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 NUP62CLQ9H1M0 184 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 PDRG1Q9NUG6 133 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 CCDC9Q9Y3X0 531 aaKnown RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 USP16Q9Y5T5 823 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 NPM3O75607 178 aaKnown RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 CHGBP05060 677 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 STK3Q13188 491 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 LARP1BQ659C4 914 aaKnown RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 C11orf57Q6ZUT1 292 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 RHPN1Q8TCX5 695 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 CLIP2Q9UDT6 1046 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 ANXA1P04083 346 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 IFIT2P09913 472 aaKnown RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 KCNA4P22459 653 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 LARP1Q6PKG0 1096 aaKnown RBP5.76□□□□□ -1.49
LIMA1-214ENST00000552783 PLCD3Q8N3E9 789 aa5.76□□□□□ -1.49
LIMA1-214ENST00000552783 CCDC112Q8NEF3 446 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms