RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 DRC1Q96MC2 740 aa9.09□□□□□ -0.95
VPS29-210ENST00000552130 KIAA1522Q9P206 1035 aaPredicted RBP9.09□□□□□ -0.95
VPS29-210ENST00000552130 ATXN7O15265 892 aaPredicted RBP9.08□□□□□ -0.96
VPS29-210ENST00000552130 MAPTP10636 758 aaKnown RBP9.08□□□□□ -0.96
VPS29-210ENST00000552130 NCLP19338 710 aaKnown RBP9.08□□□□□ -0.96
VPS29-210ENST00000552130 ADH6P28332 368 aa9.08□□□□□ -0.96
VPS29-210ENST00000552130 TAF7LQ5H9L4 462 aa9.08□□□□□ -0.96
VPS29-210ENST00000552130 ANKRD13AQ8IZ07 590 aa9.08□□□□□ -0.96
VPS29-210ENST00000552130 GDF10P55107 478 aa9.07□□□□□ -0.96
VPS29-210ENST00000552130 EIF4G2P78344 907 aaKnown RBP eCLIP9.07□□□□□ -0.96
VPS29-210ENST00000552130 MRRFQ96E11 262 aaKnown RBP9.07□□□□□ -0.96
VPS29-210ENST00000552130 SIRT1Q96EB6 747 aa9.07□□□□□ -0.96
VPS29-210ENST00000552130 TRIM11Q96F44 468 aa9.07□□□□□ -0.96
VPS29-210ENST00000552130 NIFKQ9BYG3 293 aaKnown RBP9.07□□□□□ -0.96
VPS29-210ENST00000552130 TBC1D2BQ9UPU7 963 aa9.07□□□□□ -0.96
VPS29-210ENST00000552130 KRTAP9-6A0A140TA67 174 aa9.06□□□□□ -0.96
VPS29-210ENST00000552130 SMTNP53814 917 aa9.06□□□□□ -0.96
VPS29-210ENST00000552130 SLFNL1Q499Z3 407 aa9.06□□□□□ -0.96
VPS29-210ENST00000552130 SREK1Q8WXA9 508 aaKnown RBP9.06□□□□□ -0.96
VPS29-210ENST00000552130 GLMNQ92990 594 aa9.06□□□□□ -0.96
VPS29-210ENST00000552130 SLC4A9Q96Q91 983 aa9.06□□□□□ -0.96
VPS29-210ENST00000552130 MDFIQ99750 246 aa9.06□□□□□ -0.96
VPS29-210ENST00000552130 IQSEC3Q9UPP2 1182 aaPredicted RBP9.06□□□□□ -0.96
VPS29-210ENST00000552130 A0A1W2PNR3 127 aa9.05□□□□□ -0.96
VPS29-210ENST00000552130 FAM157BP0CG42 384 aa9.05□□□□□ -0.96
VPS29-210ENST00000552130 MTFR1Q15390 333 aa9.05□□□□□ -0.96
VPS29-210ENST00000552130 WWC1Q8IX03 1113 aa9.05□□□□□ -0.96
VPS29-210ENST00000552130 PSMD1Q99460 953 aa9.05□□□□□ -0.96
VPS29-210ENST00000552130 CADPSQ9ULU8 1353 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 DCDC2BA2VCK2 349 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 CARNS1A5YM72 827 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 CD33P20138 364 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 DOC2BQ14184 412 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 OXLD1Q5BKU9 147 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 ZNF468Q5VIY5 522 aaPredicted RBP9.04□□□□□ -0.96
VPS29-210ENST00000552130 ZDHHC3Q9NYG2 299 aa9.04□□□□□ -0.96
VPS29-210ENST00000552130 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.03□□□□□ -0.96
VPS29-210ENST00000552130 TMEM229AB2RXF0 380 aa9.03□□□□□ -0.96
VPS29-210ENST00000552130 SAMD5Q5TGI4 173 aa9.03□□□□□ -0.96
VPS29-210ENST00000552130 ZIC5Q96T25 663 aa9.03□□□□□ -0.96
VPS29-210ENST00000552130 CDK2AP1O14519 115 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 EFSO43281 561 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 TCF3P15923 654 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 C8orf37Q96NL8 207 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 PLVAPQ9BX97 442 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 SEMA6BQ9H3T3 888 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 USP3Q9Y6I4 520 aa9.02□□□□□ -0.97
VPS29-210ENST00000552130 SPATA31C1P0DKV0 1188 aa9.01□□□□□ -0.97
VPS29-210ENST00000552130 MAP7D1Q3KQU3 841 aa9.01□□□□□ -0.97
VPS29-210ENST00000552130 TXNDC2Q86VQ3 553 aa9.01□□□□□ -0.97
VPS29-210ENST00000552130 AIDAQ96BJ3 306 aa9.01□□□□□ -0.97
VPS29-210ENST00000552130 STRN4Q9NRL3 753 aa9.01□□□□□ -0.97
VPS29-210ENST00000552130 BCCIPQ9P287 314 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS29-210ENST00000552130 KHNYNO15037 678 aaKnown RBP9□□□□□ -0.97
VPS29-210ENST00000552130 GATA4P43694 442 aa9□□□□□ -0.97
VPS29-210ENST00000552130 PCBP4P57723 403 aaKnown RBP9□□□□□ -0.97
VPS29-210ENST00000552130 LAMC2Q13753 1193 aa9□□□□□ -0.97
VPS29-210ENST00000552130 VRTNQ9H8Y1 702 aa9□□□□□ -0.97
VPS29-210ENST00000552130 GDPD2Q9HCC8 539 aa9□□□□□ -0.97
VPS29-210ENST00000552130 PRM3Q9NNZ6 103 aa9□□□□□ -0.97
VPS29-210ENST00000552130 A6NJY4 79 aa8.99□□□□□ -0.97
VPS29-210ENST00000552130 POM121CA8CG34 1229 aa8.99□□□□□ -0.97
VPS29-210ENST00000552130 RFX1P22670 979 aa8.99□□□□□ -0.97
VPS29-210ENST00000552130 RSPO4Q2I0M5 234 aaPredicted RBP8.99□□□□□ -0.97
VPS29-210ENST00000552130 NBPF1Q3BBV0 1214 aa8.99□□□□□ -0.97
VPS29-210ENST00000552130 ARSJQ5FYB0 599 aaPredicted RBP8.99□□□□□ -0.97
VPS29-210ENST00000552130 NKAPLQ5M9Q1 402 aa8.99□□□□□ -0.97
VPS29-210ENST00000552130 COL9A3Q14050 684 aaPredicted RBP8.98□□□□□ -0.97
VPS29-210ENST00000552130 TICAM2Q86XR7 235 aa8.98□□□□□ -0.97
VPS29-210ENST00000552130 PLPP7Q8NBV4 271 aa8.98□□□□□ -0.97
VPS29-210ENST00000552130 MARK1Q9P0L2 795 aa8.98□□□□□ -0.97
VPS29-210ENST00000552130 GNEQ9Y223 722 aaKnown RBP8.98□□□□□ -0.97
VPS29-210ENST00000552130 ELOA3CA0A087WX78 387 aaPredicted RBP8.97□□□□□ -0.97
VPS29-210ENST00000552130 ANKRD62A6NC57 917 aa8.97□□□□□ -0.97
VPS29-210ENST00000552130 ELOA3DA6NLF2 546 aaPredicted RBP8.97□□□□□ -0.97
VPS29-210ENST00000552130 TATP17735 454 aaPredicted RBP8.97□□□□□ -0.97
VPS29-210ENST00000552130 ELOA3BQ3SY89 546 aa8.97□□□□□ -0.97
VPS29-210ENST00000552130 FOXD4L6Q3SYB3 417 aaPredicted RBP8.97□□□□□ -0.97
VPS29-210ENST00000552130 FOXD4L3Q6VB84 417 aaPredicted RBP8.97□□□□□ -0.97
VPS29-210ENST00000552130 ELOA3Q8NG57 546 aa8.97□□□□□ -0.97
VPS29-210ENST00000552130 PCDHGA11Q9Y5H2 935 aa8.97□□□□□ -0.97
VPS29-210ENST00000552130 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.97□□□□□ -0.97
VPS29-210ENST00000552130 ERCC3P19447 782 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 SRPK2P78362 688 aaKnown RBP8.96□□□□□ -0.98
VPS29-210ENST00000552130 VAC14Q08AM6 782 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 ZMYM1Q5SVZ6 1142 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 KRTAP1-3Q8IUG1 177 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 C7orf43Q8WVR3 580 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 SERTAD1Q9UHV2 236 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 BRPF3Q9ULD4 1205 aa8.96□□□□□ -0.98
VPS29-210ENST00000552130 ADARB2-AS1A8MUL3 147 aa8.95□□□□□ -0.98
VPS29-210ENST00000552130 CLSTN1O94985 981 aa8.95□□□□□ -0.98
VPS29-210ENST00000552130 ZNF16P17020 682 aaPredicted RBP8.95□□□□□ -0.98
VPS29-210ENST00000552130 ABL2P42684 1182 aa8.95□□□□□ -0.98
VPS29-210ENST00000552130 UBXN4Q92575 508 aa8.95□□□□□ -0.98
VPS29-210ENST00000552130 PRR12Q9ULL5 1215 aa8.95□□□□□ -0.98
VPS29-210ENST00000552130 CFAP70Q5T0N1 1121 aa8.94□□□□□ -0.98
VPS29-210ENST00000552130 PRDM6Q9NQX0 595 aa8.94□□□□□ -0.98
VPS29-210ENST00000552130 SIN3BO75182 1162 aa8.93□□□□□ -0.98
VPS29-210ENST00000552130 TXLNAP40222 546 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms