RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 C16orf71Q8IYS4 520 aaPredicted RBP14.58□□□□□ -0.08
VPS29-208ENST00000550267 SLC34A2O95436 690 aa14.57□□□□□ -0.08
VPS29-208ENST00000550267 KCNA3P22001 575 aa14.57□□□□□ -0.08
VPS29-208ENST00000550267 RFC4P35249 363 aa14.57□□□□□ -0.08
VPS29-208ENST00000550267 COL13A1Q5TAT6 717 aaPredicted RBP14.57□□□□□ -0.08
VPS29-208ENST00000550267 KLRG1Q96E93 195 aa14.57□□□□□ -0.08
VPS29-208ENST00000550267 PARP3Q9Y6F1 533 aa14.57□□□□□ -0.08
VPS29-208ENST00000550267 PLEKHG2Q9H7P9 1386 aa14.57□□□□□ -0.08
VPS29-208ENST00000550267 KCPQ6ZWJ8 1503 aa14.56□□□□□ -0.08
VPS29-208ENST00000550267 RPS6KA4O75676 772 aa14.56□□□□□ -0.08
VPS29-208ENST00000550267 RC3H1Q5TC82 1133 aaKnown RBP14.56□□□□□ -0.08
VPS29-208ENST00000550267 CNTNAP4Q9C0A0 1308 aa14.56□□□□□ -0.08
VPS29-208ENST00000550267 BRCA1P38398 1863 aaKnown RBP14.55□□□□□ -0.08
VPS29-208ENST00000550267 FSTL1Q12841 308 aa14.55□□□□□ -0.08
VPS29-208ENST00000550267 CDCA8Q53HL2 280 aa14.55□□□□□ -0.08
VPS29-208ENST00000550267 JMYQ8N9B5 988 aa14.55□□□□□ -0.08
VPS29-208ENST00000550267 POLKQ9UBT6 870 aa14.55□□□□□ -0.08
VPS29-208ENST00000550267 ZNF831Q5JPB2 1677 aa14.55□□□□□ -0.08
VPS29-208ENST00000550267 COL5A3P25940 1745 aaPredicted RBP14.55□□□□□ -0.08
VPS29-208ENST00000550267 EIF4A2Q14240 407 aaKnown RBP14.54□□□□□ -0.08
VPS29-208ENST00000550267 DCAF5Q96JK2 942 aa14.54□□□□□ -0.08
VPS29-208ENST00000550267 RRAGCQ9HB90 399 aa14.54□□□□□ -0.08
VPS29-208ENST00000550267 RNF181Q9P0P0 153 aa14.54□□□□□ -0.08
VPS29-208ENST00000550267 PIM2Q9P1W9 311 aa14.54□□□□□ -0.08
VPS29-208ENST00000550267 KDM2BQ8NHM5 1336 aa14.53□□□□□ -0.08
VPS29-208ENST00000550267 ERVV-2B6SEH9 535 aa14.53□□□□□ -0.08
VPS29-208ENST00000550267 TMC2Q8TDI7 906 aa14.53□□□□□ -0.08
VPS29-208ENST00000550267 SRP68Q9UHB9 627 aaKnown RBP14.53□□□□□ -0.08
VPS29-208ENST00000550267 NUDT7P0C024 238 aa14.52□□□□□ -0.09
VPS29-208ENST00000550267 DALRD3Q5D0E6 543 aaKnown RBP14.52□□□□□ -0.09
VPS29-208ENST00000550267 ANKRD13DQ6ZTN6 518 aa14.52□□□□□ -0.09
VPS29-208ENST00000550267 ARFGEF1Q9Y6D6 1849 aa14.52□□□□□ -0.09
VPS29-208ENST00000550267 KDM6AO15550 1401 aaPredicted RBP14.51□□□□□ -0.09
VPS29-208ENST00000550267 CHRNA5P30532 468 aa14.51□□□□□ -0.09
VPS29-208ENST00000550267 DDR1Q08345 913 aa14.51□□□□□ -0.09
VPS29-208ENST00000550267 PCDHGA4Q9Y5G9 962 aa14.51□□□□□ -0.09
VPS29-208ENST00000550267 PTCD1O75127 700 aaKnown RBP14.5□□□□□ -0.09
VPS29-208ENST00000550267 HSP90AB1P08238 724 aaKnown RBP14.5□□□□□ -0.09
VPS29-208ENST00000550267 TNNT2P45379 298 aaPredicted RBP14.5□□□□□ -0.09
VPS29-208ENST00000550267 CABP4P57796 275 aa14.5□□□□□ -0.09
VPS29-208ENST00000550267 LSM11P83369 360 aaKnown RBP eCLIP14.5□□□□□ -0.099e-7■■■□□ 16.4
VPS29-208ENST00000550267 TNS4Q8IZW8 715 aa14.5□□□□□ -0.09
VPS29-208ENST00000550267 USP42Q9H9J4 1324 aaKnown RBP14.49□□□□□ -0.09
VPS29-208ENST00000550267 CRKLP46109 303 aaKnown RBP14.49□□□□□ -0.09
VPS29-208ENST00000550267 TNRC6CQ9HCJ0 1690 aaKnown RBP14.49□□□□□ -0.09
VPS29-208ENST00000550267 PPP1R37O75864 691 aa14.48□□□□□ -0.09
VPS29-208ENST00000550267 PBX2P40425 430 aa14.48□□□□□ -0.09
VPS29-208ENST00000550267 PLEKHO1Q53GL0 409 aaPredicted RBP14.48□□□□□ -0.09
VPS29-208ENST00000550267 ZNF530Q6P9A1 599 aaPredicted RBP14.48□□□□□ -0.09
VPS29-208ENST00000550267 SMC1BQ8NDV3 1235 aa14.48□□□□□ -0.09
VPS29-208ENST00000550267 MYH14Q7Z406 1995 aaKnown RBP14.47□□□□□ -0.09
VPS29-208ENST00000550267 POLRMTO00411 1230 aaKnown RBP14.47□□□□□ -0.09
VPS29-208ENST00000550267 RASSF7Q02833 373 aa14.47□□□□□ -0.09
VPS29-208ENST00000550267 LHX6Q9UPM6 363 aa14.47□□□□□ -0.09
VPS29-208ENST00000550267 TJP1Q07157 1748 aa14.46□□□□□ -0.09
VPS29-208ENST00000550267 TM4SF1P30408 202 aa14.46□□□□□ -0.09
VPS29-208ENST00000550267 MTHFSP49914 203 aa14.45□□□□□ -0.1
VPS29-208ENST00000550267 PRELPP51888 382 aa14.45□□□□□ -0.1
VPS29-208ENST00000550267 INTS5Q6P9B9 1019 aaKnown RBP14.45□□□□□ -0.1
VPS29-208ENST00000550267 NFATC2IPQ8NCF5 419 aa14.45□□□□□ -0.1
VPS29-208ENST00000550267 HSPA1AP0DMV8 641 aaKnown RBP14.44□□□□□ -0.1
VPS29-208ENST00000550267 HSPA1BP0DMV9 641 aaKnown RBP14.44□□□□□ -0.1
VPS29-208ENST00000550267 AMOTQ4VCS5 1084 aa14.44□□□□□ -0.1
VPS29-208ENST00000550267 C1orf141Q5JVX7 400 aa14.44□□□□□ -0.1
VPS29-208ENST00000550267 USPL1Q5W0Q7 1092 aa14.44□□□□□ -0.1
VPS29-208ENST00000550267 ADAMTS7Q9UKP4 1686 aa14.44□□□□□ -0.1
VPS29-208ENST00000550267 AEBP1Q8IUX7 1158 aa14.43□□□□□ -0.1
VPS29-208ENST00000550267 POLR3GLQ9BT43 218 aa14.43□□□□□ -0.1
VPS29-208ENST00000550267 SBF1O95248 1867 aa14.43□□□□□ -0.1
VPS29-208ENST00000550267 ZC3H4Q9UPT8 1303 aaKnown RBP14.42□□□□□ -0.1
VPS29-208ENST00000550267 VEGFAP15692 232 aaPredicted RBP14.42□□□□□ -0.1
VPS29-208ENST00000550267 DNAJC10Q8IXB1 793 aa14.42□□□□□ -0.1
VPS29-208ENST00000550267 GLTPD2A6NH11 291 aa14.41□□□□□ -0.1
VPS29-208ENST00000550267 ZPR1O75312 459 aa14.41□□□□□ -0.1
VPS29-208ENST00000550267 LMNB1P20700 586 aa14.41□□□□□ -0.1
VPS29-208ENST00000550267 POTEEQ6S8J3 1075 aa14.41□□□□□ -0.1
VPS29-208ENST00000550267 SOS1Q07889 1333 aaPredicted RBP14.41□□□□□ -0.1
VPS29-208ENST00000550267 NFIXQ14938 502 aa14.4□□□□□ -0.1
VPS29-208ENST00000550267 TIAM2Q8IVF5 1701 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 NFKBIEO00221 500 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 SERPINB2P05120 415 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 CYP19A1P11511 503 aaPredicted RBP14.38□□□□□ -0.11
VPS29-208ENST00000550267 SULT6B1Q6IMI4 303 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 TTLL6Q8N841 843 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 BCL2L12Q9HB09 334 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 NARFQ9UHQ1 456 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 NRXN2Q9P2S2 1712 aa14.38□□□□□ -0.11
VPS29-208ENST00000550267 COL15A1P39059 1388 aa14.37□□□□□ -0.11
VPS29-208ENST00000550267 CARMIL3Q8ND23 1372 aa14.37□□□□□ -0.11
VPS29-208ENST00000550267 AFDNP55196 1824 aaKnown RBP14.37□□□□□ -0.11
VPS29-208ENST00000550267 POTECB2RU33 542 aa14.37□□□□□ -0.11
VPS29-208ENST00000550267 C2CD5Q86YS7 1000 aa14.37□□□□□ -0.11
VPS29-208ENST00000550267 PTCD2Q8WV60 388 aaKnown RBP14.37□□□□□ -0.11
VPS29-208ENST00000550267 DLEC1Q9Y238 1755 aa14.37□□□□□ -0.11
VPS29-208ENST00000550267 SLC39A6Q13433 755 aa14.36□□□□□ -0.11
VPS29-208ENST00000550267 HS6ST3Q8IZP7 471 aa14.36□□□□□ -0.11
VPS29-208ENST00000550267 SLC52A2Q9HAB3 445 aa14.36□□□□□ -0.11
VPS29-208ENST00000550267 LGR6Q9HBX8 967 aa14.36□□□□□ -0.11
VPS29-208ENST00000550267 ZBTB1Q9Y2K1 713 aa14.36□□□□□ -0.11
VPS29-208ENST00000550267 SCN11AQ9UI33 1791 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms