RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 CCDC87Q9NVE4 849 aa9.62□□□□□ -0.87
DEPDC4-208ENST00000549341 CYP27B1O15528 508 aa9.61□□□□□ -0.87
DEPDC4-208ENST00000549341 TGFB2P61812 414 aa9.61□□□□□ -0.87
DEPDC4-208ENST00000549341 ITPK1Q13572 414 aa9.61□□□□□ -0.87
DEPDC4-208ENST00000549341 CCER2I3L3R5 266 aa9.6□□□□□ -0.87
DEPDC4-208ENST00000549341 CENPBP07199 599 aaPredicted RBP9.6□□□□□ -0.87
DEPDC4-208ENST00000549341 ATP6V1AP38606 617 aa9.6□□□□□ -0.87
DEPDC4-208ENST00000549341 PPP4R3BQ5MIZ7 849 aa9.6□□□□□ -0.87
DEPDC4-208ENST00000549341 RGS20O76081 388 aa9.59□□□□□ -0.87
DEPDC4-208ENST00000549341 RASSF7Q02833 373 aa9.59□□□□□ -0.87
DEPDC4-208ENST00000549341 DALRD3Q5D0E6 543 aaKnown RBP9.59□□□□□ -0.87
DEPDC4-208ENST00000549341 KCTD12Q96CX2 325 aaKnown RBP9.59□□□□□ -0.87
DEPDC4-208ENST00000549341 TMOD3Q9NYL9 352 aa9.59□□□□□ -0.87
DEPDC4-208ENST00000549341 PARP3Q9Y6F1 533 aa9.59□□□□□ -0.87
DEPDC4-208ENST00000549341 TBC1D12O60347 775 aa9.58□□□□□ -0.88
DEPDC4-208ENST00000549341 DMRTA1Q5VZB9 504 aa9.58□□□□□ -0.88
DEPDC4-208ENST00000549341 ASAP1Q9ULH1 1129 aa9.58□□□□□ -0.88
DEPDC4-208ENST00000549341 RTCBQ9Y3I0 505 aaKnown RBP9.58□□□□□ -0.88
DEPDC4-208ENST00000549341 CHRNA5P30532 468 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 PSEN2P49810 448 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 HSP90AB2PQ58FF8 381 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 TRAPPC3LQ5T215 181 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 NLGN1Q8N2Q7 840 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 DCAF5Q96JK2 942 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 GGNBP2Q9H3C7 697 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 PIM2Q9P1W9 311 aa9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 MKRN1Q9UHC7 482 aaKnown RBP9.57□□□□□ -0.88
DEPDC4-208ENST00000549341 UBR3Q6ZT12 1888 aa9.56□□□□□ -0.88
DEPDC4-208ENST00000549341 GYS1P13807 737 aa9.56□□□□□ -0.88
DEPDC4-208ENST00000549341 RFC4P35249 363 aa9.56□□□□□ -0.88
DEPDC4-208ENST00000549341 FAM161AQ3B820 660 aa9.56□□□□□ -0.88
DEPDC4-208ENST00000549341 KIAA1551Q9HCM1 1747 aa9.56□□□□□ -0.88
DEPDC4-208ENST00000549341 N4BP2Q86UW6 1770 aaPredicted RBP9.55□□□□□ -0.88
DEPDC4-208ENST00000549341 FLT4P35916 1363 aa9.55□□□□□ -0.88
DEPDC4-208ENST00000549341 TAF1LQ8IZX4 1826 aa9.55□□□□□ -0.88
DEPDC4-208ENST00000549341 KCNA3P22001 575 aa9.55□□□□□ -0.88
DEPDC4-208ENST00000549341 ARHGEF1Q92888 912 aaKnown RBP9.55□□□□□ -0.88
DEPDC4-208ENST00000549341 TESK2Q96S53 571 aa9.55□□□□□ -0.88
DEPDC4-208ENST00000549341 C4AP0C0L4 1744 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 PKD1L3Q7Z443 1732 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 INSRP06213 1382 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 KDRP35968 1356 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 FOXN1O15353 648 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 AIDAQ96BJ3 306 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 ATG3Q9NT62 314 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 SRP68Q9UHB9 627 aaKnown RBP9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 SPG7Q9UQ90 795 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 RGPD2P0DJD1 1756 aa9.54□□□□□ -0.88
DEPDC4-208ENST00000549341 TNRC6CQ9HCJ0 1690 aaKnown RBP9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 PPM1GO15355 546 aaPredicted RBP9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 ECM2O94769 699 aaPredicted RBP9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 VEGFAP15692 232 aaPredicted RBP9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 FOXK1P85037 733 aa9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 DDR1Q08345 913 aa9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 PUS7Q96PZ0 661 aaKnown RBP9.53□□□□□ -0.88
DEPDC4-208ENST00000549341 CNTNAP4Q9C0A0 1308 aa9.52□□□□□ -0.89
DEPDC4-208ENST00000549341 ZC3H4Q9UPT8 1303 aaKnown RBP9.52□□□□□ -0.89
DEPDC4-208ENST00000549341 GLTPD2A6NH11 291 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 LMNB1P20700 586 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 NKX1-1Q15270 411 aaPredicted RBP9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 RALBP1Q15311 655 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 PLPP6Q8IY26 295 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 SLC4A9Q96Q91 983 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 PRKRIP1Q9H875 184 aaPredicted RBP9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 EMILIN1Q9Y6C2 1016 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 KIF13BQ9NQT8 1826 aa9.51□□□□□ -0.89
DEPDC4-208ENST00000549341 FYB1O15117 783 aa9.5□□□□□ -0.89
DEPDC4-208ENST00000549341 PHKG2P15735 406 aa9.5□□□□□ -0.89
DEPDC4-208ENST00000549341 CTCFP49711 727 aaPredicted RBP9.5□□□□□ -0.89
DEPDC4-208ENST00000549341 KCNK17Q96T54 332 aa9.5□□□□□ -0.89
DEPDC4-208ENST00000549341 GPHNQ9NQX3 736 aaPredicted RBP9.5□□□□□ -0.89
DEPDC4-208ENST00000549341 KNSTRNQ9Y448 316 aa9.5□□□□□ -0.89
DEPDC4-208ENST00000549341 RPS6KA4O75676 772 aa9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 PPP1R37O75864 691 aa9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 IFNL2Q8IZJ0 200 aa9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 YTHDC1Q96MU7 727 aaKnown RBP9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 IRX2Q9BZI1 471 aaPredicted RBP9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 PRDM10Q9NQV6 1147 aa9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 USP42Q9H9J4 1324 aaKnown RBP9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 MAP2P11137 1827 aaKnown RBP9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 CNTNAP1P78357 1384 aa9.49□□□□□ -0.89
DEPDC4-208ENST00000549341 KDM6AO15550 1401 aaPredicted RBP9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 POLRMTO00411 1230 aaKnown RBP9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 PTCD1O75127 700 aaKnown RBP9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 CRKLP46109 303 aaKnown RBP9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 LBX1P52954 281 aa9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 PTPN5P54829 565 aa9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 ABHD8Q96I13 439 aa9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 PANK3Q9H999 370 aa9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 VPS9D1Q9Y2B5 631 aa9.48□□□□□ -0.89
DEPDC4-208ENST00000549341 NFKBIEO00221 500 aa9.47□□□□□ -0.89
DEPDC4-208ENST00000549341 RC3H1Q5TC82 1133 aaKnown RBP9.47□□□□□ -0.89
DEPDC4-208ENST00000549341 SLC4A5Q9BY07 1137 aa9.47□□□□□ -0.89
DEPDC4-208ENST00000549341 KIF24Q5T7B8 1368 aa9.47□□□□□ -0.89
DEPDC4-208ENST00000549341 NCAPD2Q15021 1401 aa9.47□□□□□ -0.89
DEPDC4-208ENST00000549341 CCDC85CA6NKD9 419 aa9.46□□□□□ -0.9
DEPDC4-208ENST00000549341 VEGFBP49765 207 aa9.46□□□□□ -0.9
DEPDC4-208ENST00000549341 USPL1Q5W0Q7 1092 aa9.46□□□□□ -0.9
DEPDC4-208ENST00000549341 CFAP44Q96MT7 982 aa9.46□□□□□ -0.9
DEPDC4-208ENST00000549341 EYA1Q99502 592 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms