RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 RUNDC1Q96C34 613 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 MASTLQ96GX5 879 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 RRP7AQ9Y3A4 280 aaKnown RBP12.28□□□□□ -0.44
YBX3-218ENST00000546298 ERBB4Q15303 1308 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 ZC3H4Q9UPT8 1303 aaKnown RBP12.28□□□□□ -0.44
YBX3-218ENST00000546298 SRGNP10124 158 aa12.27□□□□□ -0.45
YBX3-218ENST00000546298 HSPA6P17066 643 aa12.27□□□□□ -0.45
YBX3-218ENST00000546298 ZEB1P37275 1124 aaPredicted RBP12.27□□□□□ -0.45
YBX3-218ENST00000546298 C16orf71Q8IYS4 520 aaPredicted RBP12.27□□□□□ -0.45
YBX3-218ENST00000546298 C21orf2O43822 256 aa12.26□□□□□ -0.45
YBX3-218ENST00000546298 RASSF7Q02833 373 aa12.26□□□□□ -0.45
YBX3-218ENST00000546298 NEUROD2Q15784 382 aa12.26□□□□□ -0.45
YBX3-218ENST00000546298 NYXQ9GZU5 481 aa12.26□□□□□ -0.45
YBX3-218ENST00000546298 PRKRIP1Q9H875 184 aaPredicted RBP12.26□□□□□ -0.45
YBX3-218ENST00000546298 NMRK2Q9NPI5 230 aa12.26□□□□□ -0.45
YBX3-218ENST00000546298 MAP3K15Q6ZN16 1313 aa12.26□□□□□ -0.45
YBX3-218ENST00000546298 KIAA1551Q9HCM1 1747 aa12.25□□□□□ -0.45
YBX3-218ENST00000546298 N4BP2Q86UW6 1770 aaPredicted RBP12.25□□□□□ -0.45
YBX3-218ENST00000546298 MYL6BP14649 208 aa12.25□□□□□ -0.45
YBX3-218ENST00000546298 NPR1P16066 1061 aa12.25□□□□□ -0.45
YBX3-218ENST00000546298 HLFQ16534 295 aa12.25□□□□□ -0.45
YBX3-218ENST00000546298 CCDC146Q8IYE0 955 aa12.25□□□□□ -0.45
YBX3-218ENST00000546298 ZNF219Q9P2Y4 722 aaPredicted RBP12.25□□□□□ -0.45
YBX3-218ENST00000546298 ADAMTS8Q9UP79 889 aa12.25□□□□□ -0.45
YBX3-218ENST00000546298 SIPA1L3O60292 1781 aaPredicted RBP12.25□□□□□ -0.45
YBX3-218ENST00000546298 KLRG2A4D1S0 409 aaPredicted RBP12.24□□□□□ -0.45
YBX3-218ENST00000546298 FAM177BA6PVY3 158 aa12.24□□□□□ -0.45
YBX3-218ENST00000546298 NFKBIEO00221 500 aa12.24□□□□□ -0.45
YBX3-218ENST00000546298 EIF2S2P20042 333 aaKnown RBP12.24□□□□□ -0.45
YBX3-218ENST00000546298 DPY19L2Q6NUT2 758 aa12.24□□□□□ -0.45
YBX3-218ENST00000546298 PRPF40BQ6NWY9 871 aaKnown RBP12.24□□□□□ -0.45
YBX3-218ENST00000546298 RBM46Q8TBY0 533 aaKnown RBP12.24□□□□□ -0.45
YBX3-218ENST00000546298 TAOK3Q9H2K8 898 aa12.24□□□□□ -0.45
YBX3-218ENST00000546298 LTBP3Q9NS15 1303 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 GLTPD2A6NH11 291 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 CHL1O00533 1208 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 ALDH1B1P30837 517 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 TTLL7Q6ZT98 887 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 RRAGCQ9HB90 399 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 NRXN2Q9P2S2 1712 aa12.23□□□□□ -0.45
YBX3-218ENST00000546298 ERFEQ4G0M1 354 aa12.22□□□□□ -0.45
YBX3-218ENST00000546298 PARP10Q53GL7 1025 aa12.22□□□□□ -0.45
YBX3-218ENST00000546298 CCDC93Q567U6 631 aa12.22□□□□□ -0.45
YBX3-218ENST00000546298 GIGYF2Q6Y7W6 1299 aaKnown RBP12.22□□□□□ -0.45
YBX3-218ENST00000546298 ZBTB3Q9H5J0 574 aa12.22□□□□□ -0.45
YBX3-218ENST00000546298 LAS1LQ9Y4W2 734 aaKnown RBP12.22□□□□□ -0.45
YBX3-218ENST00000546298 VEGFAP15692 232 aaPredicted RBP12.21□□□□□ -0.45
YBX3-218ENST00000546298 APLP1P51693 650 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 FSTL1Q12841 308 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 PDIA6Q15084 440 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 PPP1R42Q7Z4L9 355 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 ZNF34Q8IZ26 560 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 RTKN2Q8IZC4 609 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 TRIM35Q9UPQ4 493 aa12.21□□□□□ -0.45
YBX3-218ENST00000546298 SCN7AQ01118 1682 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 HOXB7P09629 217 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 GPTP24298 496 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 PRELPP51888 382 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 CALD1Q05682 793 aaKnown RBP12.2□□□□□ -0.46
YBX3-218ENST00000546298 HSP90AB3PQ58FF7 597 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 C7orf43Q8WVR3 580 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 CFAP44Q96MT7 982 aa12.2□□□□□ -0.46
YBX3-218ENST00000546298 VIRMAQ69YN4 1812 aaKnown RBP12.2□□□□□ -0.46
YBX3-218ENST00000546298 IBTKQ9P2D0 1353 aaPredicted RBP12.19□□□□□ -0.46
YBX3-218ENST00000546298 CRY2Q49AN0 593 aa12.19□□□□□ -0.46
YBX3-218ENST00000546298 SUSD4Q5VX71 490 aa12.19□□□□□ -0.46
YBX3-218ENST00000546298 CC2D2BQ6DHV5 1058 aa12.19□□□□□ -0.46
YBX3-218ENST00000546298 COPS6Q7L5N1 327 aa12.19□□□□□ -0.46
YBX3-218ENST00000546298 NUTM1Q86Y26 1132 aa12.19□□□□□ -0.46
YBX3-218ENST00000546298 SMC1BQ8NDV3 1235 aa12.19□□□□□ -0.46
YBX3-218ENST00000546298 RPGRQ92834 1020 aaKnown RBP12.19□□□□□ -0.46
YBX3-218ENST00000546298 DDX21Q9NR30 783 aaKnown RBP eCLIP12.19□□□□□ -0.46
YBX3-218ENST00000546298 ARFGEF1Q9Y6D6 1849 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 HOXA10P31260 410 aaPredicted RBP12.18□□□□□ -0.46
YBX3-218ENST00000546298 FKBP4Q02790 459 aaKnown RBP eCLIP12.18□□□□□ -0.46
YBX3-218ENST00000546298 AIMP1Q12904 312 aaKnown RBP12.18□□□□□ -0.46
YBX3-218ENST00000546298 GRIPAP1Q4V328 841 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 HDGFL1Q5TGJ6 251 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 LRP10Q7Z4F1 713 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 XAGE3Q8WTP9 111 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 NECTIN2Q92692 538 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 RBM17Q96I25 401 aaKnown RBP12.18□□□□□ -0.46
YBX3-218ENST00000546298 NLRP3Q96P20 1036 aa12.18□□□□□ -0.46
YBX3-218ENST00000546298 UTP14AQ9BVJ6 771 aaKnown RBP12.18□□□□□ -0.46
YBX3-218ENST00000546298 BRCA1P38398 1863 aaKnown RBP12.18□□□□□ -0.46
YBX3-218ENST00000546298 AFDNP55196 1824 aaKnown RBP12.18□□□□□ -0.46
YBX3-218ENST00000546298 RNF123Q5XPI4 1314 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 UBN2Q6ZU65 1347 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 APAF1O14727 1248 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 NTSR2O95665 410 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 ANXA1P04083 346 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 GNAI1P63096 354 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 PROSER3Q2NL68 480 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 CHMP4AQ9BY43 222 aa12.17□□□□□ -0.46
YBX3-218ENST00000546298 TMX4Q9H1E5 349 aaPredicted RBP12.17□□□□□ -0.46
YBX3-218ENST00000546298 TCIRG1Q13488 830 aa12.16□□□□□ -0.46
YBX3-218ENST00000546298 SLC10A5Q5PT55 438 aa12.16□□□□□ -0.46
YBX3-218ENST00000546298 CRAMP1Q96RY5 1269 aa12.16□□□□□ -0.46
YBX3-218ENST00000546298 IFT57Q9NWB7 429 aa12.16□□□□□ -0.46
YBX3-218ENST00000546298 DBF4Q9UBU7 674 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms