RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 L3MBTL3Q96JM7 780 aaPredicted RBP17.37■□□□□ 0.37
USP28-212ENST00000544750 CEMIPQ8WUJ3 1361 aa17.37■□□□□ 0.37
USP28-212ENST00000544750 GNAT3A8MTJ3 354 aa17.36■□□□□ 0.37
USP28-212ENST00000544750 FOXN1O15353 648 aa17.36■□□□□ 0.37
USP28-212ENST00000544750 MASTLQ96GX5 879 aa17.36■□□□□ 0.37
USP28-212ENST00000544750 SETDB2Q96T68 719 aa17.36■□□□□ 0.37
USP28-212ENST00000544750 TEFQ10587 303 aa17.35■□□□□ 0.37
USP28-212ENST00000544750 SOGA3Q5TF21 947 aa17.35■□□□□ 0.37
USP28-212ENST00000544750 ZNF330Q9Y3S2 320 aaPredicted RBP17.35■□□□□ 0.37
USP28-212ENST00000544750 KIF7Q2M1P5 1343 aa17.35■□□□□ 0.37
USP28-212ENST00000544750 KLRG2A4D1S0 409 aaPredicted RBP17.34■□□□□ 0.37
USP28-212ENST00000544750 KCNQ3O43525 872 aa17.34■□□□□ 0.37
USP28-212ENST00000544750 ITGBL1O95965 494 aaPredicted RBP17.34■□□□□ 0.37
USP28-212ENST00000544750 LDHDQ86WU2 507 aa17.34■□□□□ 0.37
USP28-212ENST00000544750 GAS2L2Q8NHY3 880 aa17.34■□□□□ 0.37
USP28-212ENST00000544750 CCER1Q8TC90 406 aaPredicted RBP17.34■□□□□ 0.37
USP28-212ENST00000544750 FMNL2Q96PY5 1086 aa17.34■□□□□ 0.37
USP28-212ENST00000544750 TAF1DQ9H5J8 278 aaPredicted RBP17.34■□□□□ 0.37
USP28-212ENST00000544750 PRDM10Q9NQV6 1147 aa17.34■□□□□ 0.37
USP28-212ENST00000544750 IQCA1LA6NCM1 817 aa17.33■□□□□ 0.36
USP28-212ENST00000544750 ST5P78524 1137 aa17.33■□□□□ 0.36
USP28-212ENST00000544750 DZIP3Q86Y13 1208 aaKnown RBP17.32■□□□□ 0.36
USP28-212ENST00000544750 USP16Q9Y5T5 823 aa17.32■□□□□ 0.36
USP28-212ENST00000544750 VEGFBP49765 207 aa17.31■□□□□ 0.36
USP28-212ENST00000544750 CC2D1BQ5T0F9 858 aaKnown RBP17.31■□□□□ 0.36
USP28-212ENST00000544750 CLEC4GQ6UXB4 293 aa17.31■□□□□ 0.36
USP28-212ENST00000544750 SNED1Q8TER0 1413 aa17.3■□□□□ 0.36
USP28-212ENST00000544750 NPC1L1Q9UHC9 1359 aa17.3■□□□□ 0.36
USP28-212ENST00000544750 ZNF541Q9H0D2 1346 aa17.3■□□□□ 0.36
USP28-212ENST00000544750 CCDC93Q567U6 631 aa17.3■□□□□ 0.36
USP28-212ENST00000544750 NUP98P52948 1817 aa17.29■□□□□ 0.36
USP28-212ENST00000544750 PRAMEF22A3QJZ6 481 aa17.29■□□□□ 0.36
USP28-212ENST00000544750 TMEM88BA6NKF7 163 aa17.29■□□□□ 0.36
USP28-212ENST00000544750 NPR1P16066 1061 aa17.29■□□□□ 0.36
USP28-212ENST00000544750 PIP4K2AP48426 406 aaPredicted RBP17.29■□□□□ 0.36
USP28-212ENST00000544750 FKBP4Q02790 459 aaKnown RBP eCLIP17.29■□□□□ 0.36
USP28-212ENST00000544750 PHACTR3Q96KR7 559 aa17.29■□□□□ 0.36
USP28-212ENST00000544750 WBP1LQ9NX94 342 aa17.29■□□□□ 0.36
USP28-212ENST00000544750 BTBD11A6QL63 1104 aa17.28■□□□□ 0.36
USP28-212ENST00000544750 U2SURPO15042 1029 aaKnown RBP17.28■□□□□ 0.36
USP28-212ENST00000544750 CTCFP49711 727 aaPredicted RBP17.28■□□□□ 0.36
USP28-212ENST00000544750 OLFM4Q6UX06 510 aa17.28■□□□□ 0.36
USP28-212ENST00000544750 NPM2Q86SE8 214 aaKnown RBP17.28■□□□□ 0.36
USP28-212ENST00000544750 NBPF5PQ86XG9 351 aaPredicted RBP17.28■□□□□ 0.36
USP28-212ENST00000544750 LTBP1Q14766 1721 aa17.27■□□□□ 0.36
USP28-212ENST00000544750 FZD9O00144 591 aa17.27■□□□□ 0.36
USP28-212ENST00000544750 RGL2O15211 777 aa17.27■□□□□ 0.36
USP28-212ENST00000544750 NPHP1O15259 732 aa17.27■□□□□ 0.36
USP28-212ENST00000544750 ZNF277Q9NRM2 450 aaPredicted RBP17.27■□□□□ 0.36
USP28-212ENST00000544750 HACL1Q9UJ83 578 aa17.27■□□□□ 0.36
USP28-212ENST00000544750 THSD7BQ9C0I4 1608 aa17.27■□□□□ 0.36
USP28-212ENST00000544750 LAMB4A4D0S4 1761 aa17.27■□□□□ 0.35
USP28-212ENST00000544750 TRPM7Q96QT4 1865 aa17.27■□□□□ 0.35
USP28-212ENST00000544750 RASSF10A6NK89 507 aa17.26■□□□□ 0.35
USP28-212ENST00000544750 RSPH6AQ9H0K4 717 aa17.26■□□□□ 0.35
USP28-212ENST00000544750 NBPF26B4DH59 902 aa17.25■□□□□ 0.35
USP28-212ENST00000544750 EPHX2P34913 555 aa17.25■□□□□ 0.35
USP28-212ENST00000544750 NBPF10Q6P3W6 841 aaKnown RBP17.25■□□□□ 0.35
USP28-212ENST00000544750 NBPF15Q8N660 670 aa17.25■□□□□ 0.35
USP28-212ENST00000544750 COL4A5P29400 1685 aa17.25■□□□□ 0.35
USP28-212ENST00000544750 SNRPA1P09661 255 aaKnown RBP17.24■□□□□ 0.35
USP28-212ENST00000544750 EAPPQ56P03 285 aaPredicted RBP17.24■□□□□ 0.35
USP28-212ENST00000544750 TPTE2Q6XPS3 522 aa17.24■□□□□ 0.35
USP28-212ENST00000544750 RTKN2Q8IZC4 609 aa17.24■□□□□ 0.35
USP28-212ENST00000544750 ZNF652Q9Y2D9 606 aa17.24■□□□□ 0.35
USP28-212ENST00000544750 RNF123Q5XPI4 1314 aa17.23■□□□□ 0.35
USP28-212ENST00000544750 PRKAR2BP31323 418 aa17.23■□□□□ 0.35
USP28-212ENST00000544750 IARSP41252 1262 aaKnown RBP17.23■□□□□ 0.35
USP28-212ENST00000544750 LBX1P52954 281 aa17.23■□□□□ 0.35
USP28-212ENST00000544750 PNMA8AQ86V59 439 aaPredicted RBP17.23■□□□□ 0.35
USP28-212ENST00000544750 CNTROBQ8N137 903 aa17.23■□□□□ 0.35
USP28-212ENST00000544750 AIDAQ96BJ3 306 aa17.23■□□□□ 0.35
USP28-212ENST00000544750 NIP7Q9Y221 180 aaKnown RBP eCLIP17.23■□□□□ 0.35
USP28-212ENST00000544750 DLG5Q8TDM6 1919 aa17.23■□□□□ 0.35
USP28-212ENST00000544750 HSPA8P11142 646 aaKnown RBP17.22■□□□□ 0.35
USP28-212ENST00000544750 DEFB115Q30KQ5 88 aa17.22■□□□□ 0.35
USP28-212ENST00000544750 MAP1SQ66K74 1059 aaPredicted RBP17.22■□□□□ 0.35
USP28-212ENST00000544750 GPC2Q8N158 579 aa17.22■□□□□ 0.35
USP28-212ENST00000544750 SYNE4Q8N205 404 aa17.22■□□□□ 0.35
USP28-212ENST00000544750 KDM3BQ7LBC6 1761 aa17.21■□□□□ 0.35
USP28-212ENST00000544750 ALDH1B1P30837 517 aa17.21■□□□□ 0.35
USP28-212ENST00000544750 HLFQ16534 295 aa17.21■□□□□ 0.35
USP28-212ENST00000544750 CRY2Q49AN0 593 aa17.21■□□□□ 0.35
USP28-212ENST00000544750 PSMD1Q99460 953 aa17.21■□□□□ 0.35
USP28-212ENST00000544750 CLEC11AQ9Y240 323 aa17.21■□□□□ 0.35
USP28-212ENST00000544750 WDR33Q9C0J8 1336 aaKnown RBP17.21■□□□□ 0.34
USP28-212ENST00000544750 ABCC12Q96J65 1359 aa17.19■□□□□ 0.34
USP28-212ENST00000544750 MCM10Q7L590 875 aa17.19■□□□□ 0.34
USP28-212ENST00000544750 FAM177BA6PVY3 158 aa17.18■□□□□ 0.34
USP28-212ENST00000544750 DDX21Q9NR30 783 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP28-212ENST00000544750 RIC1Q4ADV7 1423 aa17.18■□□□□ 0.34
USP28-212ENST00000544750 MAP2K1Q02750 393 aaPredicted RBP17.17■□□□□ 0.34
USP28-212ENST00000544750 ABHD8Q96I13 439 aa17.17■□□□□ 0.34
USP28-212ENST00000544750 HOXA10P31260 410 aaPredicted RBP17.16■□□□□ 0.34
USP28-212ENST00000544750 SCNN1DP51172 638 aa17.16■□□□□ 0.34
USP28-212ENST00000544750 DCTN1Q14203 1278 aa17.16■□□□□ 0.34
USP28-212ENST00000544750 CC2D2BQ6DHV5 1058 aa17.16■□□□□ 0.34
USP28-212ENST00000544750 JDP2Q8WYK2 163 aa17.16■□□□□ 0.34
USP28-212ENST00000544750 HTATSF1O43719 755 aaKnown RBP17.15■□□□□ 0.34
USP28-212ENST00000544750 SLC34A2O95436 690 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms