RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 ABCC4O15439 1325 aa35.22■■■■□ 3.23
CCM2-218ENST00000541586 PTPRCP08575 1304 aa35.22■■■■□ 3.23
CCM2-218ENST00000541586 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP35.21■■■■□ 3.23
CCM2-218ENST00000541586 IL6STP40189 918 aaPredicted RBP35.21■■■■□ 3.23
CCM2-218ENST00000541586 TRAPPC3LQ5T215 181 aa35.21■■■■□ 3.23
CCM2-218ENST00000541586 MSH5O43196 834 aa35.2■■■■□ 3.23
CCM2-218ENST00000541586 AAMPQ13685 434 aa35.2■■■■□ 3.23
CCM2-218ENST00000541586 ERBB4Q15303 1308 aa35.2■■■■□ 3.23
CCM2-218ENST00000541586 EIF5P55010 431 aaKnown RBP35.2■■■■□ 3.23
CCM2-218ENST00000541586 AIMP1Q12904 312 aaKnown RBP35.2■■■■□ 3.23
CCM2-218ENST00000541586 G2E3Q7L622 706 aa35.2■■■■□ 3.23
CCM2-218ENST00000541586 DDX19BQ9UMR2 479 aa35.19■■■■□ 3.22
CCM2-218ENST00000541586 R3HDM1Q15032 1099 aaKnown RBP35.18■■■■□ 3.22
CCM2-218ENST00000541586 ARHGEF1Q92888 912 aaKnown RBP35.18■■■■□ 3.22
CCM2-218ENST00000541586 SSFA2P28290 1259 aa35.17■■■■□ 3.22
CCM2-218ENST00000541586 PHAXQ9H814 394 aaKnown RBP35.17■■■■□ 3.22
CCM2-218ENST00000541586 HYPKQ9NX55 129 aa35.17■■■■□ 3.22
CCM2-218ENST00000541586 CACNA1FO60840 1977 aa35.17■■■■□ 3.22
CCM2-218ENST00000541586 TBC1D2BQ9UPU7 963 aa35.16■■■■□ 3.22
CCM2-218ENST00000541586 COL15A1P39059 1388 aa35.15■■■■□ 3.22
CCM2-218ENST00000541586 PSDA5PKW4 1024 aaPredicted RBP35.15■■■■□ 3.22
CCM2-218ENST00000541586 RFC4P35249 363 aa35.15■■■■□ 3.22
CCM2-218ENST00000541586 COPS6Q7L5N1 327 aa35.15■■■■□ 3.22
CCM2-218ENST00000541586 COL23A1Q86Y22 540 aaPredicted RBP35.15■■■■□ 3.22
CCM2-218ENST00000541586 PNPLA7Q6ZV29 1317 aa35.14■■■■□ 3.22
CCM2-218ENST00000541586 XAGE3Q8WTP9 111 aa35.14■■■■□ 3.22
CCM2-218ENST00000541586 FLIIQ13045 1269 aa35.13■■■■□ 3.21
CCM2-218ENST00000541586 LRP10Q7Z4F1 713 aa35.13■■■■□ 3.21
CCM2-218ENST00000541586 TTLL7Q6ZT98 887 aa35.12■■■■□ 3.21
CCM2-218ENST00000541586 DZIP3Q86Y13 1208 aaKnown RBP35.12■■■■□ 3.21
CCM2-218ENST00000541586 FLAD1Q8NFF5 587 aa35.12■■■■□ 3.21
CCM2-218ENST00000541586 ADRA2BP18089 450 aa35.12■■■■□ 3.21
CCM2-218ENST00000541586 PDGFDQ9GZP0 370 aaPredicted RBP35.12■■■■□ 3.21
CCM2-218ENST00000541586 A0A087WZG4 1122 aa35.11■■■■□ 3.21
CCM2-218ENST00000541586 UBR3Q6ZT12 1888 aa35.11■■■■□ 3.21
CCM2-218ENST00000541586 PELP1Q8IZL8 1130 aaKnown RBP35.1■■■■□ 3.21
CCM2-218ENST00000541586 ZPR1O75312 459 aa35.09■■■■□ 3.21
CCM2-218ENST00000541586 SRP68Q9UHB9 627 aaKnown RBP35.09■■■■□ 3.21
CCM2-218ENST00000541586 INTS3Q68E01 1043 aaKnown RBP35.08■■■■□ 3.21
CCM2-218ENST00000541586 KIF6Q6ZMV9 814 aa35.07■■■■□ 3.2
CCM2-218ENST00000541586 KDM2BQ8NHM5 1336 aa35.07■■■■□ 3.2
CCM2-218ENST00000541586 FKBP5Q13451 457 aaPredicted RBP35.06■■■■□ 3.2
CCM2-218ENST00000541586 ZBTB3Q9H5J0 574 aa35.06■■■■□ 3.2
CCM2-218ENST00000541586 ZBTB40Q9NUA8 1239 aa35.06■■■■□ 3.2
CCM2-218ENST00000541586 PCDHB15Q9Y5E8 787 aa35.06■■■■□ 3.2
CCM2-218ENST00000541586 USPL1Q5W0Q7 1092 aa35.06■■■■□ 3.2
CCM2-218ENST00000541586 TUBGCP6Q96RT7 1819 aa35.05■■■■□ 3.2
CCM2-218ENST00000541586 ZBTB7BO15156 539 aaPredicted RBP35.05■■■■□ 3.2
CCM2-218ENST00000541586 NARFQ9UHQ1 456 aa35.05■■■■□ 3.2
CCM2-218ENST00000541586 F6X3S4 739 aa35.04■■■■□ 3.2
CCM2-218ENST00000541586 ANKRD13DQ6ZTN6 518 aa35.03■■■■□ 3.2
CCM2-218ENST00000541586 CENPQQ7L2Z9 268 aaPredicted RBP35.02■■■■□ 3.2
CCM2-218ENST00000541586 CHMP4BQ9H444 224 aaKnown RBP35.02■■■■□ 3.2
CCM2-218ENST00000541586 CAMTA2O94983 1202 aa35.01■■■■□ 3.2
CCM2-218ENST00000541586 RIC3Q7Z5B4 369 aa35.01■■■■□ 3.2
CCM2-218ENST00000541586 MAP3K15Q6ZN16 1313 aa35.01■■■■□ 3.19
CCM2-218ENST00000541586 USP42Q9H9J4 1324 aaKnown RBP35.01■■■■□ 3.19
CCM2-218ENST00000541586 DDX58O95786 925 aaKnown RBP35.01■■■■□ 3.19
CCM2-218ENST00000541586 HLFQ16534 295 aa35.01■■■■□ 3.19
CCM2-218ENST00000541586 IGHDP01880 384 aa34.99■■■■□ 3.19
CCM2-218ENST00000541586 SLC4A10Q6U841 1118 aa34.99■■■■□ 3.19
CCM2-218ENST00000541586 PI4KAP2A4QPH2 592 aa34.98■■■■□ 3.19
CCM2-218ENST00000541586 MSL1Q68DK7 614 aa34.98■■■■□ 3.19
CCM2-218ENST00000541586 PI4KAP1Q8N8J0 262 aa34.98■■■■□ 3.19
CCM2-218ENST00000541586 GYS1P13807 737 aa34.98■■■■□ 3.19
CCM2-218ENST00000541586 PLBD2Q8NHP8 589 aa34.98■■■■□ 3.19
CCM2-218ENST00000541586 CCT4P50991 539 aaKnown RBP34.97■■■■□ 3.19
CCM2-218ENST00000541586 ERVV-1B6SEH8 477 aa34.96■■■■□ 3.19
CCM2-218ENST00000541586 ZBTB7AO95365 584 aa34.96■■■■□ 3.19
CCM2-218ENST00000541586 BCL2L12Q9HB09 334 aa34.96■■■■□ 3.19
CCM2-218ENST00000541586 KSR2Q6VAB6 950 aa34.95■■■■□ 3.19
CCM2-218ENST00000541586 MAP3K2Q9Y2U5 619 aa34.95■■■■□ 3.19
CCM2-218ENST00000541586 BICDL1Q6ZP65 573 aa34.95■■■■□ 3.18
CCM2-218ENST00000541586 C4AP0C0L4 1744 aa34.94■■■■□ 3.18
CCM2-218ENST00000541586 ZNF652Q9Y2D9 606 aa34.94■■■■□ 3.18
CCM2-218ENST00000541586 PXDNLA1KZ92 1463 aa34.94■■■■□ 3.18
CCM2-218ENST00000541586 GIGYF2Q6Y7W6 1299 aaKnown RBP34.92■■■■□ 3.18
CCM2-218ENST00000541586 QSER1Q2KHR3 1735 aa34.92■■■■□ 3.18
CCM2-218ENST00000541586 SLC16A10Q8TF71 515 aa34.92■■■■□ 3.18
CCM2-218ENST00000541586 ATF5Q9Y2D1 282 aaPredicted RBP34.92■■■■□ 3.18
CCM2-218ENST00000541586 CLEC4GQ6UXB4 293 aa34.91■■■■□ 3.18
CCM2-218ENST00000541586 TBC1D9BQ66K14 1250 aa34.9■■■■□ 3.18
CCM2-218ENST00000541586 NLGN1Q8N2Q7 840 aa34.9■■■■□ 3.18
CCM2-218ENST00000541586 RWDD1Q9H446 243 aaPredicted RBP34.9■■■■□ 3.18
CCM2-218ENST00000541586 ADCY9O60503 1353 aa34.89■■■■□ 3.18
CCM2-218ENST00000541586 N4BP2Q86UW6 1770 aaPredicted RBP34.89■■■■□ 3.18
CCM2-218ENST00000541586 GPTP24298 496 aa34.89■■■■□ 3.18
CCM2-218ENST00000541586 DNAAF4Q8WXU2 420 aa34.89■■■■□ 3.18
CCM2-218ENST00000541586 MYD88Q99836 296 aa34.89■■■■□ 3.18
CCM2-218ENST00000541586 C1orf115Q9H7X2 142 aa34.89■■■■□ 3.18
CCM2-218ENST00000541586 ATP5J2-PTCD1G3V325 749 aa34.88■■■■□ 3.17
CCM2-218ENST00000541586 NIP7Q9Y221 180 aaKnown RBP eCLIP34.88■■■■□ 3.17
CCM2-218ENST00000541586 TCIRG1Q13488 830 aa34.86■■■■□ 3.17
CCM2-218ENST00000541586 HDAC1Q13547 482 aaPredicted RBP34.86■■■■□ 3.17
CCM2-218ENST00000541586 MEIS3Q99687 375 aa34.86■■■■□ 3.17
CCM2-218ENST00000541586 METTL22Q9BUU2 404 aaPredicted RBP34.86■■■■□ 3.17
CCM2-218ENST00000541586 MTFR1LQ9H019 292 aa34.86■■■■□ 3.17
CCM2-218ENST00000541586 HSP90AB3PQ58FF7 597 aa34.85■■■■□ 3.17
CCM2-218ENST00000541586 SETDB2Q96T68 719 aa34.85■■■■□ 3.17
CCM2-218ENST00000541586 FAM177BA6PVY3 158 aa34.84■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 270.3 ms