RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 HOXB7P09629 217 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 PDIA6Q15084 440 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 PROSER3Q2NL68 480 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 HDGFL1Q5TGJ6 251 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 CLEC4GQ6UXB4 293 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 KIF6Q6ZMV9 814 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 SETDB2Q96T68 719 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 LAMB4A4D0S4 1761 aa11.97□□□□□ -0.49
SNHG1-215ENST00000540904 C10orf71Q711Q0 1435 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 IL16Q14005 1332 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 A0A0G2JLW4 131 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 NPHP1O15259 732 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 TGFB2P61812 414 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 HLFQ16534 295 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 TTLL7Q6ZT98 887 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 MIER1Q8N108 512 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 ZBTB3Q9H5J0 574 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 CHPF2Q9P2E5 772 aa11.96□□□□□ -0.49
SNHG1-215ENST00000540904 CARMIL3Q8ND23 1372 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 MAP3K15Q6ZN16 1313 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 ERVV-1B6SEH8 477 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 AIMP1Q12904 312 aaKnown RBP11.95□□□□□ -0.5
SNHG1-215ENST00000540904 POTEHQ6S545 545 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 LRP10Q7Z4F1 713 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 WDR63Q8IWG1 891 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 C8orf58Q8NAV2 365 aa11.95□□□□□ -0.5
SNHG1-215ENST00000540904 DDX21Q9NR30 783 aaKnown RBP eCLIP11.95□□□□□ -0.5
SNHG1-215ENST00000540904 NIP7Q9Y221 180 aaKnown RBP eCLIP11.95□□□□□ -0.56e-44■■■■□ 24.8
SNHG1-215ENST00000540904 SCN7AQ01118 1682 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 DPEP1P16444 411 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 YBX3P16989 372 aaKnown RBP eCLIP11.94□□□□□ -0.5
SNHG1-215ENST00000540904 COPS6Q7L5N1 327 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 CCDC24Q8N4L8 307 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 TSPYL6Q8N831 410 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 XAGE3Q8WTP9 111 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 DBF4Q9UBU7 674 aaPredicted RBP11.94□□□□□ -0.5
SNHG1-215ENST00000540904 PXDNLA1KZ92 1463 aa11.94□□□□□ -0.5
SNHG1-215ENST00000540904 FAM177BA6PVY3 158 aa11.93□□□□□ -0.5
SNHG1-215ENST00000540904 RGL2O15211 777 aa11.93□□□□□ -0.5
SNHG1-215ENST00000540904 CHRNA5P30532 468 aa11.93□□□□□ -0.5
SNHG1-215ENST00000540904 NBPF5PQ86XG9 351 aaPredicted RBP11.93□□□□□ -0.5
SNHG1-215ENST00000540904 CNBD1Q8NA66 436 aa11.93□□□□□ -0.5
SNHG1-215ENST00000540904 FANCIQ9NVI1 1328 aa11.92□□□□□ -0.5
SNHG1-215ENST00000540904 GPTP24298 496 aa11.92□□□□□ -0.5
SNHG1-215ENST00000540904 PRR5LQ6MZQ0 368 aa11.92□□□□□ -0.5
SNHG1-215ENST00000540904 HYPKQ9NX55 129 aa11.92□□□□□ -0.5
SNHG1-215ENST00000540904 GRIN3BO60391 1043 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 KCNA3P22001 575 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 ST5P78524 1137 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 GOLGA2Q08379 1002 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 TWISTNBQ3B726 338 aaPredicted RBP11.91□□□□□ -0.5
SNHG1-215ENST00000540904 CCDC30Q5VVM6 783 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 GIGYF2Q6Y7W6 1299 aaKnown RBP11.91□□□□□ -0.5
SNHG1-215ENST00000540904 MYH16Q9H6N6 1097 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 BCS1LQ9Y276 419 aa11.91□□□□□ -0.5
SNHG1-215ENST00000540904 BCORQ6W2J9 1755 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 TCERG1O14776 1098 aaKnown RBP11.9□□□□□ -0.5
SNHG1-215ENST00000540904 SLC4A2P04920 1241 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 GTF2E1P29083 439 aaPredicted RBP11.9□□□□□ -0.5
SNHG1-215ENST00000540904 TPTE2Q6XPS3 522 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 C2CD5Q86YS7 1000 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 BRIP1Q9BX63 1249 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 CHMP4AQ9BY43 222 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 PIM2Q9P1W9 311 aa11.9□□□□□ -0.5
SNHG1-215ENST00000540904 UBN2Q6ZU65 1347 aa11.89□□□□□ -0.51
SNHG1-215ENST00000540904 ZNF521Q96K83 1311 aa11.89□□□□□ -0.51
SNHG1-215ENST00000540904 ATP10DQ9P241 1426 aa11.89□□□□□ -0.51
SNHG1-215ENST00000540904 H0YIN7 160 aa11.89□□□□□ -0.51
SNHG1-215ENST00000540904 PDE6BP35913 854 aa11.89□□□□□ -0.51
SNHG1-215ENST00000540904 EXOSC9Q06265 439 aaKnown RBP11.89□□□□□ -0.51
SNHG1-215ENST00000540904 PHAXQ9H814 394 aaKnown RBP11.89□□□□□ -0.51
SNHG1-215ENST00000540904 KIF13BQ9NQT8 1826 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 YY1P25490 414 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 DALRD3Q5D0E6 543 aaKnown RBP11.88□□□□□ -0.51
SNHG1-215ENST00000540904 SUSD4Q5VX71 490 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 ANKRD13DQ6ZTN6 518 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 NUTM1Q86Y26 1132 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 ZNF34Q8IZ26 560 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 PLBD2Q8NHP8 589 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 STK31Q9BXU1 1019 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 NYXQ9GZU5 481 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 NRXN2Q9P2S2 1712 aa11.88□□□□□ -0.51
SNHG1-215ENST00000540904 TCIRG1Q13488 830 aa11.87□□□□□ -0.51
SNHG1-215ENST00000540904 PARP10Q53GL7 1025 aa11.87□□□□□ -0.51
SNHG1-215ENST00000540904 HSP90AB3PQ58FF7 597 aa11.87□□□□□ -0.51
SNHG1-215ENST00000540904 PPP1R42Q7Z4L9 355 aa11.87□□□□□ -0.51
SNHG1-215ENST00000540904 ZNF622Q969S3 477 aaKnown RBP eCLIP11.87□□□□□ -0.51
SNHG1-215ENST00000540904 AFDNP55196 1824 aaKnown RBP11.87□□□□□ -0.51
SNHG1-215ENST00000540904 N4BP2Q86UW6 1770 aaPredicted RBP11.87□□□□□ -0.51
SNHG1-215ENST00000540904 E9PSI1 815 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 VAMP4O75379 141 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 ERFEQ4G0M1 354 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 RIC3Q7Z5B4 369 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 TTLL6Q8N841 843 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 ZNF428Q96B54 188 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 UTP14AQ9BVJ6 771 aaKnown RBP11.86□□□□□ -0.51
SNHG1-215ENST00000540904 PDZRN3Q9UPQ7 1066 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 KIAA1551Q9HCM1 1747 aa11.86□□□□□ -0.51
SNHG1-215ENST00000540904 ATP5J2-PTCD1G3V325 749 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms