RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 CCDC146Q8IYE0 955 aa27.55■■■□□ 2
CHFR-217ENST00000540537 CCDC24Q8N4L8 307 aa27.55■■■□□ 2
CHFR-217ENST00000540537 COL11A2P13942 1736 aaPredicted RBP27.55■■■□□ 2
CHFR-217ENST00000540537 NBPF5PQ86XG9 351 aaPredicted RBP27.53■■■□□ 2
CHFR-217ENST00000540537 RRP7AQ9Y3A4 280 aaKnown RBP27.53■■■□□ 2
CHFR-217ENST00000540537 ERBB4Q15303 1308 aa27.52■■■□□ 2
CHFR-217ENST00000540537 ZNF622Q969S3 477 aaKnown RBP eCLIP27.52■■■□□ 2
CHFR-217ENST00000540537 ADAMTS8Q9UP79 889 aa27.52■■■□□ 2
CHFR-217ENST00000540537 NIP7Q9Y221 180 aaKnown RBP eCLIP27.52■■■□□ 2
CHFR-217ENST00000540537 SENP3-EIF4A1A0A087X0R7 540 aa27.51■■□□□ 1.99
CHFR-217ENST00000540537 HLFQ16534 295 aa27.51■■□□□ 1.99
CHFR-217ENST00000540537 RNF181Q9P0P0 153 aa27.51■■□□□ 1.99
CHFR-217ENST00000540537 ERVV-1B6SEH8 477 aa27.5■■□□□ 1.99
CHFR-217ENST00000540537 KIF3CO14782 793 aa27.49■■□□□ 1.99
CHFR-217ENST00000540537 RASSF7Q02833 373 aa27.49■■□□□ 1.99
CHFR-217ENST00000540537 NEUROD2Q15784 382 aa27.49■■□□□ 1.99
CHFR-217ENST00000540537 NGEFQ8N5V2 710 aa27.49■■□□□ 1.99
CHFR-217ENST00000540537 NUP98P52948 1817 aa27.48■■□□□ 1.99
CHFR-217ENST00000540537 MAP3K15Q6ZN16 1313 aa27.48■■□□□ 1.99
CHFR-217ENST00000540537 STYK1Q6J9G0 422 aa27.48■■□□□ 1.99
CHFR-217ENST00000540537 TPTE2Q6XPS3 522 aa27.48■■□□□ 1.99
CHFR-217ENST00000540537 KIF6Q6ZMV9 814 aa27.48■■□□□ 1.99
CHFR-217ENST00000540537 SRGNP10124 158 aa27.47■■□□□ 1.99
CHFR-217ENST00000540537 MYL6BP14649 208 aa27.47■■□□□ 1.99
CHFR-217ENST00000540537 CNKSR1Q969H4 720 aa27.47■■□□□ 1.99
CHFR-217ENST00000540537 TRIM35Q9UPQ4 493 aa27.47■■□□□ 1.99
CHFR-217ENST00000540537 TTLL7Q6ZT98 887 aa27.46■■□□□ 1.99
CHFR-217ENST00000540537 MASTLQ96GX5 879 aa27.46■■□□□ 1.99
CHFR-217ENST00000540537 ARFGEF2Q9Y6D5 1785 aa27.45■■□□□ 1.99
CHFR-217ENST00000540537 LMNB1P20700 586 aa27.45■■□□□ 1.98
CHFR-217ENST00000540537 ZC3H4Q9UPT8 1303 aaKnown RBP27.44■■□□□ 1.98
CHFR-217ENST00000540537 CHL1O00533 1208 aa27.44■■□□□ 1.98
CHFR-217ENST00000540537 SLX4Q8IY92 1834 aa27.44■■□□□ 1.98
CHFR-217ENST00000540537 KLRG2A4D1S0 409 aaPredicted RBP27.43■■□□□ 1.98
CHFR-217ENST00000540537 NFKBIEO00221 500 aa27.43■■□□□ 1.98
CHFR-217ENST00000540537 CACNA1SQ13698 1873 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 FER1L6Q2WGJ9 1857 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 C21orf2O43822 256 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 EIF2S2P20042 333 aaKnown RBP27.42■■□□□ 1.98
CHFR-217ENST00000540537 PDIA6Q15084 440 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 LRP10Q7Z4F1 713 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 NMRK2Q9NPI5 230 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 CCDC88AQ3V6T2 1871 aa27.42■■□□□ 1.98
CHFR-217ENST00000540537 KDM2BQ8NHM5 1336 aa27.41■■□□□ 1.98
CHFR-217ENST00000540537 FAM177BA6PVY3 158 aa27.41■■□□□ 1.98
CHFR-217ENST00000540537 PRELPP51888 382 aa27.41■■□□□ 1.98
CHFR-217ENST00000540537 PRPF40BQ6NWY9 871 aaKnown RBP27.41■■□□□ 1.98
CHFR-217ENST00000540537 NYXQ9GZU5 481 aa27.41■■□□□ 1.98
CHFR-217ENST00000540537 ZBTB3Q9H5J0 574 aa27.41■■□□□ 1.98
CHFR-217ENST00000540537 IBTKQ9P2D0 1353 aaPredicted RBP27.4■■□□□ 1.98
CHFR-217ENST00000540537 NPR1P16066 1061 aa27.4■■□□□ 1.98
CHFR-217ENST00000540537 ZNF219Q9P2Y4 722 aaPredicted RBP27.4■■□□□ 1.98
CHFR-217ENST00000540537 GTF2E1P29083 439 aaPredicted RBP27.39■■□□□ 1.98
CHFR-217ENST00000540537 SOGA3Q5TF21 947 aa27.39■■□□□ 1.98
CHFR-217ENST00000540537 GIGYF2Q6Y7W6 1299 aaKnown RBP27.39■■□□□ 1.98
CHFR-217ENST00000540537 LAS1LQ9Y4W2 734 aaKnown RBP27.38■■□□□ 1.97
CHFR-217ENST00000540537 TIAM2Q8IVF5 1701 aa27.38■■□□□ 1.97
CHFR-217ENST00000540537 LTBP3Q9NS15 1303 aa27.38■■□□□ 1.97
CHFR-217ENST00000540537 TNRC6CQ9HCJ0 1690 aaKnown RBP27.37■■□□□ 1.97
CHFR-217ENST00000540537 TOMM70O94826 608 aa27.37■■□□□ 1.97
CHFR-217ENST00000540537 PROSER3Q2NL68 480 aa27.37■■□□□ 1.97
CHFR-217ENST00000540537 UBN2Q6ZU65 1347 aa27.37■■□□□ 1.97
CHFR-217ENST00000540537 DICER1Q9UPY3 1922 aaKnown RBP27.36■■□□□ 1.97
CHFR-217ENST00000540537 ZNF34Q8IZ26 560 aa27.36■■□□□ 1.97
CHFR-217ENST00000540537 CFAP44Q96MT7 982 aa27.36■■□□□ 1.97
CHFR-217ENST00000540537 ABCC12Q96J65 1359 aa27.35■■□□□ 1.97
CHFR-217ENST00000540537 RIC1Q4ADV7 1423 aa27.35■■□□□ 1.97
CHFR-217ENST00000540537 GPTP24298 496 aa27.35■■□□□ 1.97
CHFR-217ENST00000540537 KRT24Q2M2I5 525 aa27.35■■□□□ 1.97
CHFR-217ENST00000540537 TAOK3Q9H2K8 898 aa27.35■■□□□ 1.97
CHFR-217ENST00000540537 APAF1O14727 1248 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 ANXA1P04083 346 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 HOXB7P09629 217 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 HSPA6P17066 643 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 NUTM1Q86Y26 1132 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 C7orf43Q8WVR3 580 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 CEP350Q5VT06 3117 aa27.34■■□□□ 1.97
CHFR-217ENST00000540537 CRY2Q49AN0 593 aa27.33■■□□□ 1.97
CHFR-217ENST00000540537 PARP10Q53GL7 1025 aa27.33■■□□□ 1.97
CHFR-217ENST00000540537 SUSD4Q5VX71 490 aa27.33■■□□□ 1.97
CHFR-217ENST00000540537 NECTIN2Q92692 538 aa27.33■■□□□ 1.97
CHFR-217ENST00000540537 DDX21Q9NR30 783 aaKnown RBP eCLIP27.33■■□□□ 1.97
CHFR-217ENST00000540537 GLTPD2A6NH11 291 aa27.32■■□□□ 1.96
CHFR-217ENST00000540537 ALDH1B1P30837 517 aa27.32■■□□□ 1.96
CHFR-217ENST00000540537 ERFEQ4G0M1 354 aa27.32■■□□□ 1.96
CHFR-217ENST00000540537 NTSR2O95665 410 aa27.31■■□□□ 1.96
CHFR-217ENST00000540537 CCDC93Q567U6 631 aa27.31■■□□□ 1.96
CHFR-217ENST00000540537 PPP1R42Q7Z4L9 355 aa27.31■■□□□ 1.96
CHFR-217ENST00000540537 RRAGCQ9HB90 399 aa27.31■■□□□ 1.96
CHFR-217ENST00000540537 ZNF316A6NFI3 1004 aaPredicted RBP27.3■■□□□ 1.96
CHFR-217ENST00000540537 ZNF853P0CG23 659 aa27.3■■□□□ 1.96
CHFR-217ENST00000540537 CALD1Q05682 793 aaKnown RBP27.3■■□□□ 1.96
CHFR-217ENST00000540537 COPS6Q7L5N1 327 aa27.3■■□□□ 1.96
CHFR-217ENST00000540537 C16orf71Q8IYS4 520 aaPredicted RBP27.3■■□□□ 1.96
CHFR-217ENST00000540537 RBM46Q8TBY0 533 aaKnown RBP27.3■■□□□ 1.96
CHFR-217ENST00000540537 XAGE3Q8WTP9 111 aa27.3■■□□□ 1.96
CHFR-217ENST00000540537 ANKRD36CQ5JPF3 1778 aa27.3■■□□□ 1.96
CHFR-217ENST00000540537 HDGFL1Q5TGJ6 251 aa27.29■■□□□ 1.96
CHFR-217ENST00000540537 MBIPQ9NS73 344 aa27.29■■□□□ 1.96
CHFR-217ENST00000540537 IFT57Q9NWB7 429 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms