RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 PROSER3Q2NL68 480 aa13.52□□□□□ -0.25
LEMD3-202ENST00000539442 LRP10Q7Z4F1 713 aa13.52□□□□□ -0.25
LEMD3-202ENST00000539442 PHAXQ9H814 394 aaKnown RBP13.52□□□□□ -0.25
LEMD3-202ENST00000539442 TNNQ9UQP3 1299 aa13.52□□□□□ -0.25
LEMD3-202ENST00000539442 TJP1Q07157 1748 aa13.52□□□□□ -0.25
LEMD3-202ENST00000539442 DDX58O95786 925 aaKnown RBP13.51□□□□□ -0.25
LEMD3-202ENST00000539442 ATP6V1AP38606 617 aa13.51□□□□□ -0.25
LEMD3-202ENST00000539442 PTF1AQ7RTS3 328 aa13.51□□□□□ -0.25
LEMD3-202ENST00000539442 EXOC6Q8TAG9 804 aa13.51□□□□□ -0.25
LEMD3-202ENST00000539442 CHMP4BQ9H444 224 aaKnown RBP13.51□□□□□ -0.25
LEMD3-202ENST00000539442 DDX19BQ9UMR2 479 aa13.51□□□□□ -0.25
LEMD3-202ENST00000539442 COG6Q9Y2V7 657 aa13.51□□□□□ -0.25
LEMD3-202ENST00000539442 NBPF26B4DH59 902 aa13.5□□□□□ -0.25
LEMD3-202ENST00000539442 ANXA1P04083 346 aa13.5□□□□□ -0.25
LEMD3-202ENST00000539442 MYL6BP14649 208 aa13.5□□□□□ -0.25
LEMD3-202ENST00000539442 NBPF14Q5TI25 921 aa13.5□□□□□ -0.25
LEMD3-202ENST00000539442 INTS3Q68E01 1043 aaKnown RBP13.5□□□□□ -0.25
LEMD3-202ENST00000539442 NBPF10Q6P3W6 841 aaKnown RBP13.5□□□□□ -0.25
LEMD3-202ENST00000539442 TMEM57Q8N5G2 664 aa13.5□□□□□ -0.25
LEMD3-202ENST00000539442 NBPF15Q8N660 670 aa13.5□□□□□ -0.25
LEMD3-202ENST00000539442 A1BGP04217 495 aa13.49□□□□□ -0.25
LEMD3-202ENST00000539442 HMGB2P26583 209 aaKnown RBP13.49□□□□□ -0.25
LEMD3-202ENST00000539442 CCT4P50991 539 aaKnown RBP13.49□□□□□ -0.25
LEMD3-202ENST00000539442 KSR2Q6VAB6 950 aa13.49□□□□□ -0.25
LEMD3-202ENST00000539442 ITPRIPQ8IWB1 547 aa13.49□□□□□ -0.25
LEMD3-202ENST00000539442 ADCY9O60503 1353 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 RREB1Q92766 1687 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 TRIM37O94972 964 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 ITPK1Q13572 414 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 COPS6Q7L5N1 327 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 XAGE3Q8WTP9 111 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 DNAAF4Q8WXU2 420 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 CCDC87Q9NVE4 849 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 PPP4R2Q9NY27 417 aa13.48□□□□□ -0.25
LEMD3-202ENST00000539442 ATP10DQ9P241 1426 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 LY75O60449 1722 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 CNTNAP4Q9C0A0 1308 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 PI4KAP2A4QPH2 592 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 F6X3S4 739 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 IL6STP40189 918 aaPredicted RBP13.47□□□□□ -0.25
LEMD3-202ENST00000539442 CRKLP46109 303 aaKnown RBP13.47□□□□□ -0.25
LEMD3-202ENST00000539442 SLC27A3Q5K4L6 730 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 PI4KAP1Q8N8J0 262 aa13.47□□□□□ -0.25
LEMD3-202ENST00000539442 CCNL1Q9UK58 526 aaPredicted RBP13.47□□□□□ -0.25
LEMD3-202ENST00000539442 COL5A3P25940 1745 aaPredicted RBP13.47□□□□□ -0.25
LEMD3-202ENST00000539442 IBTKQ9P2D0 1353 aaPredicted RBP13.46□□□□□ -0.25
LEMD3-202ENST00000539442 PIP4K2AP48426 406 aaPredicted RBP13.46□□□□□ -0.25
LEMD3-202ENST00000539442 AIMP1Q12904 312 aaKnown RBP13.46□□□□□ -0.25
LEMD3-202ENST00000539442 SLC4A10Q6U841 1118 aa13.46□□□□□ -0.25
LEMD3-202ENST00000539442 ANKRD13DQ6ZTN6 518 aa13.46□□□□□ -0.25
LEMD3-202ENST00000539442 PLBD2Q8NHP8 589 aa13.46□□□□□ -0.25
LEMD3-202ENST00000539442 ZBTB1Q9Y2K1 713 aa13.46□□□□□ -0.25
LEMD3-202ENST00000539442 N4BP2Q86UW6 1770 aaPredicted RBP13.45□□□□□ -0.26
LEMD3-202ENST00000539442 PLSCR1O15162 318 aa13.45□□□□□ -0.26
LEMD3-202ENST00000539442 RC3H1Q5TC82 1133 aaKnown RBP13.45□□□□□ -0.26
LEMD3-202ENST00000539442 INTS5Q6P9B9 1019 aaKnown RBP13.45□□□□□ -0.26
LEMD3-202ENST00000539442 RIC3Q7Z5B4 369 aa13.45□□□□□ -0.26
LEMD3-202ENST00000539442 NPM2Q86SE8 214 aaKnown RBP13.45□□□□□ -0.26
LEMD3-202ENST00000539442 LINC00116Q8NCU8 138 aa13.45□□□□□ -0.26
LEMD3-202ENST00000539442 SRCIN1Q9C0H9 1055 aa13.45□□□□□ -0.26
LEMD3-202ENST00000539442 MAP3K2Q9Y2U5 619 aa13.45□□□□□ -0.26
LEMD3-202ENST00000539442 ZBTB7BO15156 539 aaPredicted RBP13.44□□□□□ -0.26
LEMD3-202ENST00000539442 ALDH1L1O75891 902 aa13.44□□□□□ -0.26
LEMD3-202ENST00000539442 EIF5P55010 431 aaKnown RBP13.44□□□□□ -0.26
LEMD3-202ENST00000539442 BEND3Q5T5X7 828 aa13.44□□□□□ -0.26
LEMD3-202ENST00000539442 LCE2DQ5TA82 110 aaPredicted RBP13.44□□□□□ -0.26
LEMD3-202ENST00000539442 LINS1Q8NG48 757 aa13.44□□□□□ -0.26
LEMD3-202ENST00000539442 METTL22Q9BUU2 404 aaPredicted RBP13.44□□□□□ -0.26
LEMD3-202ENST00000539442 NEXNQ0ZGT2 675 aa13.43□□□□□ -0.26
LEMD3-202ENST00000539442 KIF6Q6ZMV9 814 aa13.43□□□□□ -0.26
LEMD3-202ENST00000539442 ZBTB40Q9NUA8 1239 aa13.43□□□□□ -0.26
LEMD3-202ENST00000539442 RGPD3A6NKT7 1758 aaPredicted RBP13.43□□□□□ -0.26
LEMD3-202ENST00000539442 RGPD4Q7Z3J3 1758 aa13.43□□□□□ -0.26
LEMD3-202ENST00000539442 MAP3K15Q6ZN16 1313 aa13.42□□□□□ -0.26
LEMD3-202ENST00000539442 TNS1Q9HBL0 1735 aaKnown RBP13.42□□□□□ -0.26
LEMD3-202ENST00000539442 APBA3O96018 575 aa13.42□□□□□ -0.26
LEMD3-202ENST00000539442 TTLL7Q6ZT98 887 aa13.42□□□□□ -0.26
LEMD3-202ENST00000539442 ZNF330Q9Y3S2 320 aaPredicted RBP13.42□□□□□ -0.26
LEMD3-202ENST00000539442 A0A087WZG4 1122 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 ERVV-1B6SEH8 477 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 RGL2O15211 777 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 GNAI3P08754 354 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 TXNRD1Q16881 649 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 DZIP3Q86Y13 1208 aaKnown RBP13.41□□□□□ -0.26
LEMD3-202ENST00000539442 CCDC136Q96JN2 1154 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 COL15A1P39059 1388 aa13.41□□□□□ -0.26
LEMD3-202ENST00000539442 ARFGEF2Q9Y6D5 1785 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 C4BP0C0L5 1744 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 NUP188Q5SRE5 1749 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 RPS6KA4O75676 772 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 KCNQ4P56696 695 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 HSP90AB3PQ58FF7 597 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 MYD88Q99836 296 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 ZBTB3Q9H5J0 574 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 SCUBE2Q9NQ36 999 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 LRRC4BQ9NT99 713 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 TAF1LQ8IZX4 1826 aa13.4□□□□□ -0.26
LEMD3-202ENST00000539442 MYH14Q7Z406 1995 aaKnown RBP13.4□□□□□ -0.27
LEMD3-202ENST00000539442 NEURL1BA8MQ27 555 aa13.39□□□□□ -0.27
LEMD3-202ENST00000539442 IGKV5-2P06315 115 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms