RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 RNMTO43148 476 aaKnown RBP16.49■□□□□ 0.23
YBX3-207ENST00000539204 ST5P78524 1137 aa16.49■□□□□ 0.23
YBX3-207ENST00000539204 CNBD1Q8NA66 436 aa16.49■□□□□ 0.23
YBX3-207ENST00000539204 DDX21Q9NR30 783 aaKnown RBP eCLIP16.49■□□□□ 0.23
YBX3-207ENST00000539204 TBC1D2BQ9UPU7 963 aa16.49■□□□□ 0.23
YBX3-207ENST00000539204 GRM1Q13255 1194 aa16.48■□□□□ 0.23
YBX3-207ENST00000539204 CCDC93Q567U6 631 aa16.48■□□□□ 0.23
YBX3-207ENST00000539204 NPM2Q86SE8 214 aaKnown RBP16.48■□□□□ 0.23
YBX3-207ENST00000539204 C7orf43Q8WVR3 580 aa16.48■□□□□ 0.23
YBX3-207ENST00000539204 CAPNS2Q96L46 248 aa16.48■□□□□ 0.23
YBX3-207ENST00000539204 ZNF277Q9NRM2 450 aaPredicted RBP16.48■□□□□ 0.23
YBX3-207ENST00000539204 ZNF541Q9H0D2 1346 aa16.47■□□□□ 0.23
YBX3-207ENST00000539204 FKBP4Q02790 459 aaKnown RBP eCLIP16.47■□□□□ 0.23
YBX3-207ENST00000539204 ZNF330Q9Y3S2 320 aaPredicted RBP16.47■□□□□ 0.23
YBX3-207ENST00000539204 RNF123Q5XPI4 1314 aa16.46■□□□□ 0.23
YBX3-207ENST00000539204 TTC5Q8N0Z6 440 aa16.46■□□□□ 0.23
YBX3-207ENST00000539204 SLX4Q8IY92 1834 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 MAP2K2P36507 400 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 CYP4F22Q6NT55 531 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 RTKN2Q8IZC4 609 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 GPC2Q8N158 579 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 POLR3GLQ9BT43 218 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 TEX13AQ9BXU3 409 aaPredicted RBP16.45■□□□□ 0.22
YBX3-207ENST00000539204 MCOLN1Q9GZU1 580 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 TSKSQ9UJT2 592 aa16.45■□□□□ 0.22
YBX3-207ENST00000539204 ANKRD31Q8N7Z5 1873 aa16.44■□□□□ 0.22
YBX3-207ENST00000539204 FZD9O00144 591 aa16.44■□□□□ 0.22
YBX3-207ENST00000539204 NPR1P16066 1061 aa16.44■□□□□ 0.22
YBX3-207ENST00000539204 IL6STP40189 918 aaPredicted RBP16.44■□□□□ 0.22
YBX3-207ENST00000539204 SCN11AQ9UI33 1791 aa16.43■□□□□ 0.22
YBX3-207ENST00000539204 CA12O43570 354 aa16.43■□□□□ 0.22
YBX3-207ENST00000539204 IL13P35225 146 aa16.43■□□□□ 0.22
YBX3-207ENST00000539204 IARSP41252 1262 aaKnown RBP16.42■□□□□ 0.22
YBX3-207ENST00000539204 MORC1Q86VD1 984 aa16.42■□□□□ 0.22
YBX3-207ENST00000539204 SYNE4Q8N205 404 aa16.42■□□□□ 0.22
YBX3-207ENST00000539204 JDP2Q8WYK2 163 aa16.42■□□□□ 0.22
YBX3-207ENST00000539204 LMOD1P29536 600 aaPredicted RBP16.41■□□□□ 0.22
YBX3-207ENST00000539204 FMR1Q06787 632 aaKnown RBP eCLIP16.41■□□□□ 0.22
YBX3-207ENST00000539204 NBPF5PQ86XG9 351 aaPredicted RBP16.41■□□□□ 0.22
YBX3-207ENST00000539204 AOC2O75106 756 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 CAMTA2O94983 1202 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 ALDH1B1P30837 517 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 EIF6P56537 245 aaKnown RBP16.4■□□□□ 0.22
YBX3-207ENST00000539204 DGKZQ13574 1117 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 CST9Q5W186 159 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 GJA3Q9Y6H8 435 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 TLL2Q9Y6L7 1015 aa16.4■□□□□ 0.22
YBX3-207ENST00000539204 COL11A2P13942 1736 aaPredicted RBP16.39■□□□□ 0.21
YBX3-207ENST00000539204 ADAMTSL1Q8N6G6 1762 aa16.39■□□□□ 0.21
YBX3-207ENST00000539204 KLRG2A4D1S0 409 aaPredicted RBP16.39■□□□□ 0.21
YBX3-207ENST00000539204 MTHFSDQ2M296 383 aaKnown RBP16.39■□□□□ 0.21
YBX3-207ENST00000539204 OLFM4Q6UX06 510 aa16.39■□□□□ 0.21
YBX3-207ENST00000539204 ZNF496Q96IT1 587 aaPredicted RBP16.39■□□□□ 0.21
YBX3-207ENST00000539204 A1BGP04217 495 aa16.38■□□□□ 0.21
YBX3-207ENST00000539204 ZNF790Q6PG37 636 aa16.38■□□□□ 0.21
YBX3-207ENST00000539204 TPTE2Q6XPS3 522 aa16.38■□□□□ 0.21
YBX3-207ENST00000539204 USP50Q70EL3 339 aaPredicted RBP16.38■□□□□ 0.21
YBX3-207ENST00000539204 DZIP3Q86Y13 1208 aaKnown RBP16.38■□□□□ 0.21
YBX3-207ENST00000539204 PANK3Q9H999 370 aa16.38■□□□□ 0.21
YBX3-207ENST00000539204 TNRC18O15417 2968 aaPredicted RBP16.38■□□□□ 0.21
YBX3-207ENST00000539204 PDE4DIPQ5VU43 2346 aa16.37■□□□□ 0.21
YBX3-207ENST00000539204 TRAF5O00463 557 aa16.37■□□□□ 0.21
YBX3-207ENST00000539204 HMOX1P09601 288 aa16.37■□□□□ 0.21
YBX3-207ENST00000539204 CLEC4GQ6UXB4 293 aa16.37■□□□□ 0.21
YBX3-207ENST00000539204 HEG1Q9ULI3 1381 aa16.37■□□□□ 0.21
YBX3-207ENST00000539204 MRC1P22897 1456 aa16.36■□□□□ 0.21
YBX3-207ENST00000539204 EPS15P42566 896 aa16.36■□□□□ 0.21
YBX3-207ENST00000539204 SAPCD2Q86UD0 394 aa16.36■□□□□ 0.21
YBX3-207ENST00000539204 BRPF1P55201 1214 aaPredicted RBP16.35■□□□□ 0.21
YBX3-207ENST00000539204 TEFQ10587 303 aa16.35■□□□□ 0.21
YBX3-207ENST00000539204 PSMD1Q99460 953 aa16.35■□□□□ 0.21
YBX3-207ENST00000539204 CACNA1SQ13698 1873 aa16.35■□□□□ 0.21
YBX3-207ENST00000539204 SCNN1DP51172 638 aa16.34■□□□□ 0.21
YBX3-207ENST00000539204 FMNL2Q96PY5 1086 aa16.34■□□□□ 0.21
YBX3-207ENST00000539204 ZNF652Q9Y2D9 606 aa16.34■□□□□ 0.21
YBX3-207ENST00000539204 CELF2O95319 508 aaKnown RBP16.33■□□□□ 0.2
YBX3-207ENST00000539204 HHIPL1Q96JK4 782 aa16.33■□□□□ 0.2
YBX3-207ENST00000539204 CASP8AP2Q9UKL3 1982 aa16.33■□□□□ 0.2
YBX3-207ENST00000539204 GTF2E1P29083 439 aaPredicted RBP16.32■□□□□ 0.2
YBX3-207ENST00000539204 CC2D2BQ6DHV5 1058 aa16.32■□□□□ 0.2
YBX3-207ENST00000539204 CIAPIN1Q6FI81 312 aa16.32■□□□□ 0.2
YBX3-207ENST00000539204 THSD7BQ9C0I4 1608 aa16.32■□□□□ 0.2
YBX3-207ENST00000539204 ARFGEF2Q9Y6D5 1785 aa16.32■□□□□ 0.2
YBX3-207ENST00000539204 FAM177BA6PVY3 158 aa16.31■□□□□ 0.2
YBX3-207ENST00000539204 LARGE2Q8N3Y3 721 aa16.31■□□□□ 0.2
YBX3-207ENST00000539204 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
YBX3-207ENST00000539204 NIP7Q9Y221 180 aaKnown RBP eCLIP16.31■□□□□ 0.2
YBX3-207ENST00000539204 GRIPAP1Q4V328 841 aa16.3■□□□□ 0.2
YBX3-207ENST00000539204 ADARB2Q9NS39 739 aaKnown RBP16.3■□□□□ 0.2
YBX3-207ENST00000539204 USP16Q9Y5T5 823 aa16.3■□□□□ 0.2
YBX3-207ENST00000539204 SCN7AQ01118 1682 aa16.3■□□□□ 0.2
YBX3-207ENST00000539204 GNAT3A8MTJ3 354 aa16.29■□□□□ 0.2
YBX3-207ENST00000539204 SOX10P56693 466 aa16.29■□□□□ 0.2
YBX3-207ENST00000539204 PRPF38BQ5VTL8 546 aaKnown RBP16.29■□□□□ 0.2
YBX3-207ENST00000539204 KNSTRNQ9Y448 316 aa16.29■□□□□ 0.2
YBX3-207ENST00000539204 UBR2Q8IWV8 1755 aa16.28■□□□□ 0.2
YBX3-207ENST00000539204 PIP4K2AP48426 406 aaPredicted RBP16.28■□□□□ 0.2
YBX3-207ENST00000539204 NOGQ13253 232 aa16.28■□□□□ 0.2
YBX3-207ENST00000539204 BTBD11A6QL63 1104 aa16.27■□□□□ 0.2
YBX3-207ENST00000539204 NIM1KQ8IY84 436 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms