RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TSHZ3Q63HK5 1081 aa16.83■□□□□ 0.28
LIG1-203ENST00000536218 RAPGEF4Q8WZA2 1011 aa16.83■□□□□ 0.28
LIG1-203ENST00000536218 CEMIPQ8WUJ3 1361 aa16.82■□□□□ 0.28
LIG1-203ENST00000536218 CHAF1AQ13111 956 aaPredicted RBP16.82■□□□□ 0.28
LIG1-203ENST00000536218 RGPD2P0DJD1 1756 aa16.82■□□□□ 0.28
LIG1-203ENST00000536218 PI4KAP2A4QPH2 592 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 GNAI3P08754 354 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 SLC39A6Q13433 755 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 PI4KAP1Q8N8J0 262 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 BABAM1Q9NWV8 329 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 CADPS2Q86UW7 1296 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 ERBB3P21860 1342 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 USP44Q9H0E7 712 aa16.81■□□□□ 0.28
LIG1-203ENST00000536218 UBTFL1P0CB47 393 aaPredicted RBP16.8■□□□□ 0.28
LIG1-203ENST00000536218 TRERF1Q96PN7 1200 aa16.8■□□□□ 0.28
LIG1-203ENST00000536218 RIOK3O14730 519 aaKnown RBP16.8■□□□□ 0.28
LIG1-203ENST00000536218 TTC22Q5TAA0 569 aa16.8■□□□□ 0.28
LIG1-203ENST00000536218 TSPY26PQ9H489 355 aa16.8■□□□□ 0.28
LIG1-203ENST00000536218 PXDNQ92626 1479 aa16.8■□□□□ 0.28
LIG1-203ENST00000536218 CDC45O75419 566 aa16.79■□□□□ 0.28
LIG1-203ENST00000536218 ERICH4A6NGS2 130 aa16.79■□□□□ 0.28
LIG1-203ENST00000536218 SRCIN1Q9C0H9 1055 aa16.79■□□□□ 0.28
LIG1-203ENST00000536218 USP25Q9UHP3 1055 aa16.79■□□□□ 0.28
LIG1-203ENST00000536218 AIMP1Q12904 312 aaKnown RBP16.79■□□□□ 0.28
LIG1-203ENST00000536218 PROSER3Q2NL68 480 aa16.78■□□□□ 0.28
LIG1-203ENST00000536218 FOXD4L6Q3SYB3 417 aaPredicted RBP16.78■□□□□ 0.28
LIG1-203ENST00000536218 FOXD4L3Q6VB84 417 aaPredicted RBP16.78■□□□□ 0.28
LIG1-203ENST00000536218 NPHP3Q7Z494 1330 aa16.78■□□□□ 0.28
LIG1-203ENST00000536218 MST1RQ04912 1400 aa16.78■□□□□ 0.28
LIG1-203ENST00000536218 SDSP20132 328 aa16.77■□□□□ 0.28
LIG1-203ENST00000536218 NBPF7P0C2Y1 421 aaPredicted RBP16.77■□□□□ 0.28
LIG1-203ENST00000536218 ZGPATQ8N5A5 531 aaKnown RBP16.77■□□□□ 0.28
LIG1-203ENST00000536218 OGFRQ9NZT2 677 aa16.77■□□□□ 0.28
LIG1-203ENST00000536218 TATP17735 454 aaPredicted RBP16.77■□□□□ 0.27
LIG1-203ENST00000536218 ATP8B2P98198 1209 aa16.77■□□□□ 0.27
LIG1-203ENST00000536218 DNAAF4Q8WXU2 420 aa16.77■□□□□ 0.27
LIG1-203ENST00000536218 IL1RAPL2Q9NP60 686 aa16.77■□□□□ 0.27
LIG1-203ENST00000536218 NFATC2IPQ8NCF5 419 aa16.76■□□□□ 0.27
LIG1-203ENST00000536218 DIAPH3Q9NSV4 1193 aa16.76■□□□□ 0.27
LIG1-203ENST00000536218 USP54Q70EL1 1684 aa16.76■□□□□ 0.27
LIG1-203ENST00000536218 CCDC66A2RUB6 948 aa16.76■□□□□ 0.27
LIG1-203ENST00000536218 ZFP91Q96JP5 570 aaPredicted RBP16.76■□□□□ 0.27
LIG1-203ENST00000536218 AK9Q5TCS8 1911 aa16.76■□□□□ 0.27
LIG1-203ENST00000536218 GIGYF1O75420 1035 aaPredicted RBP16.75■□□□□ 0.27
LIG1-203ENST00000536218 DNAJC2Q99543 621 aaKnown RBP16.75■□□□□ 0.27
LIG1-203ENST00000536218 IRX3P78415 501 aaPredicted RBP16.75■□□□□ 0.27
LIG1-203ENST00000536218 TIGD1Q96MW7 591 aa16.75■□□□□ 0.27
LIG1-203ENST00000536218 FEZ1Q99689 392 aa16.75■□□□□ 0.27
LIG1-203ENST00000536218 LRRCC1Q9C099 1032 aa16.75■□□□□ 0.27
LIG1-203ENST00000536218 SOS1Q07889 1333 aaPredicted RBP16.74■□□□□ 0.27
LIG1-203ENST00000536218 PPP1R42Q7Z4L9 355 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 DBF4Q9UBU7 674 aaPredicted RBP16.74■□□□□ 0.27
LIG1-203ENST00000536218 TRIM6-TRIM34B2RNG4 842 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 SURF6O75683 361 aaKnown RBP16.74■□□□□ 0.27
LIG1-203ENST00000536218 PIP4K2AP48426 406 aaPredicted RBP16.74■□□□□ 0.27
LIG1-203ENST00000536218 PDE1AP54750 535 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 ZBTB9Q96C00 473 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 TRIM34Q9BYJ4 488 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 LRRC37A3O60309 1634 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 SLIT3O75094 1523 aa16.74■□□□□ 0.27
LIG1-203ENST00000536218 ADCY5O95622 1261 aa16.73■□□□□ 0.27
LIG1-203ENST00000536218 MYL6BP14649 208 aa16.73■□□□□ 0.27
LIG1-203ENST00000536218 MAP3K2Q9Y2U5 619 aa16.73■□□□□ 0.27
LIG1-203ENST00000536218 SRGAP3O43295 1099 aa16.73■□□□□ 0.27
LIG1-203ENST00000536218 CWF19L2Q2TBE0 894 aaKnown RBP16.72■□□□□ 0.27
LIG1-203ENST00000536218 BEND3Q5T5X7 828 aa16.72■□□□□ 0.27
LIG1-203ENST00000536218 ANKRD7Q92527 254 aa16.72■□□□□ 0.27
LIG1-203ENST00000536218 GABPB1Q06547 395 aaPredicted RBP16.72■□□□□ 0.27
LIG1-203ENST00000536218 BRINP3Q76B58 766 aa16.72■□□□□ 0.27
LIG1-203ENST00000536218 RILPL2Q969X0 211 aa16.72■□□□□ 0.27
LIG1-203ENST00000536218 SPG7Q9UQ90 795 aa16.72■□□□□ 0.27
LIG1-203ENST00000536218 ZNF335Q9H4Z2 1342 aaPredicted RBP16.72■□□□□ 0.27
LIG1-203ENST00000536218 CYP2E1P05181 493 aaPredicted RBP16.71■□□□□ 0.27
LIG1-203ENST00000536218 HOXB7P09629 217 aa16.71■□□□□ 0.27
LIG1-203ENST00000536218 SLFN14P0C7P3 912 aa16.71■□□□□ 0.27
LIG1-203ENST00000536218 NUTM1Q86Y26 1132 aa16.71■□□□□ 0.27
LIG1-203ENST00000536218 C9orf78Q9NZ63 289 aaPredicted RBP16.71■□□□□ 0.27
LIG1-203ENST00000536218 PRDM11Q9NQV5 511 aa16.71■□□□□ 0.27
LIG1-203ENST00000536218 MED1Q15648 1581 aaPredicted RBP16.71■□□□□ 0.26
LIG1-203ENST00000536218 MBD3O95983 291 aa16.71■□□□□ 0.26
LIG1-203ENST00000536218 PHKG2P15735 406 aa16.71■□□□□ 0.26
LIG1-203ENST00000536218 ZNF790Q6PG37 636 aa16.71■□□□□ 0.26
LIG1-203ENST00000536218 SPATA31A3Q5VYP0 1347 aa16.71■□□□□ 0.26
LIG1-203ENST00000536218 RGPD5Q99666 1765 aa16.7■□□□□ 0.26
LIG1-203ENST00000536218 RABEP1Q15276 862 aa16.7■□□□□ 0.26
LIG1-203ENST00000536218 CASC1Q6TDU7 716 aa16.7■□□□□ 0.26
LIG1-203ENST00000536218 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.7■□□□□ 0.26
LIG1-203ENST00000536218 ZDHHC9Q9Y397 364 aa16.7■□□□□ 0.26
LIG1-203ENST00000536218 MX1P20591 662 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 IFNL2Q8IZJ0 200 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 TRPM3Q9HCF6 1732 aaPredicted RBP16.69■□□□□ 0.26
LIG1-203ENST00000536218 MAP4K4O95819 1239 aaPredicted RBP16.69■□□□□ 0.26
LIG1-203ENST00000536218 OS9Q13438 667 aaPredicted RBP16.69■□□□□ 0.26
LIG1-203ENST00000536218 SLC52A2Q9HAB3 445 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 STRCP1A6NGW2 1772 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 ADCY9O60503 1353 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 CYP27B1O15528 508 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 TOM1L2Q6ZVM7 507 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 GDPD2Q9HCC8 539 aa16.69■□□□□ 0.26
LIG1-203ENST00000536218 SLAIN2Q9P270 581 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms