RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 LMOD3Q0VAK6 560 aa21.3■■□□□ 1
CLSTN3-204ENST00000535313 CNKSR1Q969H4 720 aa21.3■■□□□ 1
CLSTN3-204ENST00000535313 NIP7Q9Y221 180 aaKnown RBP eCLIP21.3■■□□□ 1
CLSTN3-204ENST00000535313 KDM3BQ7LBC6 1761 aa21.3■■□□□ 1
CLSTN3-204ENST00000535313 CEP350Q5VT06 3117 aa21.3■■□□□ 1
CLSTN3-204ENST00000535313 LAMB4A4D0S4 1761 aa21.29■■□□□ 1
CLSTN3-204ENST00000535313 TOMM70O94826 608 aa21.29■■□□□ 1
CLSTN3-204ENST00000535313 TPTE2Q6XPS3 522 aa21.29■■□□□ 1
CLSTN3-204ENST00000535313 NGEFQ8N5V2 710 aa21.29■■□□□ 1
CLSTN3-204ENST00000535313 TSPYL4Q9UJ04 414 aa21.29■■□□□ 1
CLSTN3-204ENST00000535313 ZC3H4Q9UPT8 1303 aaKnown RBP21.29■■□□□ 1
CLSTN3-204ENST00000535313 SBF1O95248 1867 aa21.28■■□□□ 1
CLSTN3-204ENST00000535313 STYK1Q6J9G0 422 aa21.28■■□□□ 1
CLSTN3-204ENST00000535313 C16orf71Q8IYS4 520 aaPredicted RBP21.28■■□□□ 1
CLSTN3-204ENST00000535313 MASTLQ96GX5 879 aa21.28■■□□□ 1
CLSTN3-204ENST00000535313 RRP7AQ9Y3A4 280 aaKnown RBP21.28■■□□□ 1
CLSTN3-204ENST00000535313 C21orf2O43822 256 aa21.27■■□□□ 1
CLSTN3-204ENST00000535313 SRGNP10124 158 aa21.27■■□□□ 1
CLSTN3-204ENST00000535313 TMPOP42166 694 aaKnown RBP21.27■■□□□ 1
CLSTN3-204ENST00000535313 WDR43Q15061 677 aaKnown RBP eCLIP21.27■■□□□ 1
CLSTN3-204ENST00000535313 ZNF219Q9P2Y4 722 aaPredicted RBP21.27■■□□□ 1
CLSTN3-204ENST00000535313 HLFQ16534 295 aa21.26■□□□□ 0.99
CLSTN3-204ENST00000535313 KIF6Q6ZMV9 814 aa21.26■□□□□ 0.99
CLSTN3-204ENST00000535313 FAM177BA6PVY3 158 aa21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 ERVV-1B6SEH8 477 aa21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 NFKBIEO00221 500 aa21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 COL11A2P13942 1736 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 MYL6BP14649 208 aa21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 GTF2E1P29083 439 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 CCDC146Q8IYE0 955 aa21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 BABAM1Q9NWV8 329 aa21.25■□□□□ 0.99
CLSTN3-204ENST00000535313 SOGA3Q5TF21 947 aa21.24■□□□□ 0.99
CLSTN3-204ENST00000535313 PRPF40BQ6NWY9 871 aaKnown RBP21.24■□□□□ 0.99
CLSTN3-204ENST00000535313 ERBB4Q15303 1308 aa21.24■□□□□ 0.99
CLSTN3-204ENST00000535313 MAP3K15Q6ZN16 1313 aa21.24■□□□□ 0.99
CLSTN3-204ENST00000535313 PRELPP51888 382 aa21.23■□□□□ 0.99
CLSTN3-204ENST00000535313 NEUROD2Q15784 382 aa21.23■□□□□ 0.99
CLSTN3-204ENST00000535313 RRAGCQ9HB90 399 aa21.23■□□□□ 0.99
CLSTN3-204ENST00000535313 NPR1P16066 1061 aa21.22■□□□□ 0.99
CLSTN3-204ENST00000535313 RBM46Q8TBY0 533 aaKnown RBP21.22■□□□□ 0.99
CLSTN3-204ENST00000535313 RUNDC1Q96C34 613 aa21.22■□□□□ 0.99
CLSTN3-204ENST00000535313 NYXQ9GZU5 481 aa21.22■□□□□ 0.99
CLSTN3-204ENST00000535313 TAOK3Q9H2K8 898 aa21.22■□□□□ 0.99
CLSTN3-204ENST00000535313 GLTPD2A6NH11 291 aa21.21■□□□□ 0.99
CLSTN3-204ENST00000535313 EIF2S2P20042 333 aaKnown RBP21.21■□□□□ 0.99
CLSTN3-204ENST00000535313 TTLL7Q6ZT98 887 aa21.21■□□□□ 0.99
CLSTN3-204ENST00000535313 KLRG2A4D1S0 409 aaPredicted RBP21.2■□□□□ 0.98
CLSTN3-204ENST00000535313 ZBTB3Q9H5J0 574 aa21.2■□□□□ 0.98
CLSTN3-204ENST00000535313 PRKRIP1Q9H875 184 aaPredicted RBP21.2■□□□□ 0.98
CLSTN3-204ENST00000535313 APLP1P51693 650 aa21.19■□□□□ 0.98
CLSTN3-204ENST00000535313 ERFEQ4G0M1 354 aa21.19■□□□□ 0.98
CLSTN3-204ENST00000535313 ADAMTS8Q9UP79 889 aa21.19■□□□□ 0.98
CLSTN3-204ENST00000535313 SLX4Q8IY92 1834 aa21.19■□□□□ 0.98
CLSTN3-204ENST00000535313 LTBP3Q9NS15 1303 aa21.19■□□□□ 0.98
CLSTN3-204ENST00000535313 TNRC6CQ9HCJ0 1690 aaKnown RBP21.18■□□□□ 0.98
CLSTN3-204ENST00000535313 DPY19L2Q6NUT2 758 aa21.18■□□□□ 0.98
CLSTN3-204ENST00000535313 CCDC88AQ3V6T2 1871 aa21.18■□□□□ 0.98
CLSTN3-204ENST00000535313 GPTP24298 496 aa21.17■□□□□ 0.98
CLSTN3-204ENST00000535313 FSTL1Q12841 308 aa21.17■□□□□ 0.98
CLSTN3-204ENST00000535313 CCDC93Q567U6 631 aa21.17■□□□□ 0.98
CLSTN3-204ENST00000535313 LAS1LQ9Y4W2 734 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-204ENST00000535313 FER1L6Q2WGJ9 1857 aa21.17■□□□□ 0.98
CLSTN3-204ENST00000535313 TIAM2Q8IVF5 1701 aa21.16■□□□□ 0.98
CLSTN3-204ENST00000535313 VEGFAP15692 232 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-204ENST00000535313 ALDH1B1P30837 517 aa21.16■□□□□ 0.98
CLSTN3-204ENST00000535313 GIGYF2Q6Y7W6 1299 aaKnown RBP21.16■□□□□ 0.98
CLSTN3-204ENST00000535313 NUTM1Q86Y26 1132 aa21.16■□□□□ 0.98
CLSTN3-204ENST00000535313 CACNA1SQ13698 1873 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 NUP98P52948 1817 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 ARFGEF2Q9Y6D5 1785 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 CHL1O00533 1208 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 PDIA6Q15084 440 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 C7orf43Q8WVR3 580 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 TRIM35Q9UPQ4 493 aa21.15■□□□□ 0.98
CLSTN3-204ENST00000535313 IBTKQ9P2D0 1353 aaPredicted RBP21.14■□□□□ 0.98
CLSTN3-204ENST00000535313 UBN2Q6ZU65 1347 aa21.14■□□□□ 0.97
CLSTN3-204ENST00000535313 ZNF34Q8IZ26 560 aa21.14■□□□□ 0.97
CLSTN3-204ENST00000535313 ABCC12Q96J65 1359 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 PROSER3Q2NL68 480 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 SUSD4Q5VX71 490 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 LRP10Q7Z4F1 713 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 PPP1R42Q7Z4L9 355 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 SMC1BQ8NDV3 1235 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 NECTIN2Q92692 538 aa21.13■□□□□ 0.97
CLSTN3-204ENST00000535313 ANXA1P04083 346 aa21.12■□□□□ 0.97
CLSTN3-204ENST00000535313 CRY2Q49AN0 593 aa21.12■□□□□ 0.97
CLSTN3-204ENST00000535313 PARP10Q53GL7 1025 aa21.12■□□□□ 0.97
CLSTN3-204ENST00000535313 RTKN2Q8IZC4 609 aa21.12■□□□□ 0.97
CLSTN3-204ENST00000535313 RPGRQ92834 1020 aaKnown RBP21.12■□□□□ 0.97
CLSTN3-204ENST00000535313 DICER1Q9UPY3 1922 aaKnown RBP21.12■□□□□ 0.97
CLSTN3-204ENST00000535313 FKBP4Q02790 459 aaKnown RBP eCLIP21.11■□□□□ 0.97
CLSTN3-204ENST00000535313 NTSR2O95665 410 aa21.1■□□□□ 0.97
CLSTN3-204ENST00000535313 AIMP1Q12904 312 aaKnown RBP21.1■□□□□ 0.97
CLSTN3-204ENST00000535313 COPS6Q7L5N1 327 aa21.1■□□□□ 0.97
CLSTN3-204ENST00000535313 KRT24Q2M2I5 525 aa21.09■□□□□ 0.97
CLSTN3-204ENST00000535313 HSP90AB3PQ58FF7 597 aa21.09■□□□□ 0.97
CLSTN3-204ENST00000535313 OLFM4Q6UX06 510 aa21.09■□□□□ 0.97
CLSTN3-204ENST00000535313 XAGE3Q8WTP9 111 aa21.09■□□□□ 0.97
CLSTN3-204ENST00000535313 UTP14AQ9BVJ6 771 aaKnown RBP21.09■□□□□ 0.97
CLSTN3-204ENST00000535313 DDX21Q9NR30 783 aaKnown RBP eCLIP21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms