RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DDX21Q9NR30 783 aaKnown RBP eCLIP26.72■■□□□ 1.87
VPS28-212ENST00000530836 PXDNLA1KZ92 1463 aa26.72■■□□□ 1.87
VPS28-212ENST00000530836 RTCBQ9Y3I0 505 aaKnown RBP26.72■■□□□ 1.87
VPS28-212ENST00000530836 PNPLA7Q6ZV29 1317 aa26.71■■□□□ 1.87
VPS28-212ENST00000530836 FLAD1Q8NFF5 587 aa26.71■■□□□ 1.87
VPS28-212ENST00000530836 PCDHB15Q9Y5E8 787 aa26.71■■□□□ 1.87
VPS28-212ENST00000530836 ERBB4Q15303 1308 aa26.7■■□□□ 1.87
VPS28-212ENST00000530836 SSFA2P28290 1259 aa26.7■■□□□ 1.86
VPS28-212ENST00000530836 ZBTB1Q9Y2K1 713 aa26.7■■□□□ 1.86
VPS28-212ENST00000530836 COL5A3P25940 1745 aaPredicted RBP26.69■■□□□ 1.86
VPS28-212ENST00000530836 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.69■■□□□ 1.86
VPS28-212ENST00000530836 A1BGP04217 495 aa26.69■■□□□ 1.86
VPS28-212ENST00000530836 SMIM5Q71RC9 77 aa26.69■■□□□ 1.86
VPS28-212ENST00000530836 PDGFDQ9GZP0 370 aaPredicted RBP26.69■■□□□ 1.86
VPS28-212ENST00000530836 COL23A1Q86Y22 540 aaPredicted RBP26.68■■□□□ 1.86
VPS28-212ENST00000530836 PHAXQ9H814 394 aaKnown RBP26.68■■□□□ 1.86
VPS28-212ENST00000530836 PHF14O94880 888 aa26.68■■□□□ 1.86
VPS28-212ENST00000530836 ADRA2BP18089 450 aa26.67■■□□□ 1.86
VPS28-212ENST00000530836 HDAC1Q13547 482 aaPredicted RBP26.67■■□□□ 1.86
VPS28-212ENST00000530836 TRAPPC3LQ5T215 181 aa26.67■■□□□ 1.86
VPS28-212ENST00000530836 DDX58O95786 925 aaKnown RBP26.66■■□□□ 1.86
VPS28-212ENST00000530836 SLC4A10Q6U841 1118 aa26.66■■□□□ 1.86
VPS28-212ENST00000530836 LAMB4A4D0S4 1761 aa26.66■■□□□ 1.86
VPS28-212ENST00000530836 F6X3S4 739 aa26.65■■□□□ 1.86
VPS28-212ENST00000530836 MYH14Q7Z406 1995 aaKnown RBP26.65■■□□□ 1.86
VPS28-212ENST00000530836 IGHDP01880 384 aa26.65■■□□□ 1.86
VPS28-212ENST00000530836 PDIA6Q15084 440 aa26.65■■□□□ 1.86
VPS28-212ENST00000530836 ARHGEF1Q92888 912 aaKnown RBP26.65■■□□□ 1.86
VPS28-212ENST00000530836 MSH5O43196 834 aa26.64■■□□□ 1.85
VPS28-212ENST00000530836 IL6STP40189 918 aaPredicted RBP26.64■■□□□ 1.85
VPS28-212ENST00000530836 EIF5P55010 431 aaKnown RBP26.64■■□□□ 1.85
VPS28-212ENST00000530836 NBPF26B4DH59 902 aa26.63■■□□□ 1.85
VPS28-212ENST00000530836 NBPF10Q6P3W6 841 aaKnown RBP26.63■■□□□ 1.85
VPS28-212ENST00000530836 NBPF15Q8N660 670 aa26.63■■□□□ 1.85
VPS28-212ENST00000530836 SLC16A10Q8TF71 515 aa26.62■■□□□ 1.85
VPS28-212ENST00000530836 DNAAF4Q8WXU2 420 aa26.62■■□□□ 1.85
VPS28-212ENST00000530836 N4BP2Q86UW6 1770 aaPredicted RBP26.62■■□□□ 1.85
VPS28-212ENST00000530836 PIP4K2AP48426 406 aaPredicted RBP26.61■■□□□ 1.85
VPS28-212ENST00000530836 KSR2Q6VAB6 950 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 UBR3Q6ZT12 1888 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 ATP10DQ9P241 1426 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 PI4KAP2A4QPH2 592 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 RFC4P35249 363 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 PROSER3Q2NL68 480 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 PI4KAP1Q8N8J0 262 aa26.61■■□□□ 1.85
VPS28-212ENST00000530836 ANXA1P04083 346 aa26.6■■□□□ 1.85
VPS28-212ENST00000530836 GNAI3P08754 354 aa26.6■■□□□ 1.85
VPS28-212ENST00000530836 SRCIN1Q9C0H9 1055 aa26.59■■□□□ 1.85
VPS28-212ENST00000530836 QSER1Q2KHR3 1735 aa26.59■■□□□ 1.85
VPS28-212ENST00000530836 COL15A1P39059 1388 aa26.58■■□□□ 1.85
VPS28-212ENST00000530836 A0A087WZG4 1122 aa26.58■■□□□ 1.85
VPS28-212ENST00000530836 NPM2Q86SE8 214 aaKnown RBP26.58■■□□□ 1.85
VPS28-212ENST00000530836 TUBGCP6Q96RT7 1819 aa26.58■■□□□ 1.85
VPS28-212ENST00000530836 ADCY9O60503 1353 aa26.58■■□□□ 1.85
VPS28-212ENST00000530836 ZBTB7AO95365 584 aa26.57■■□□□ 1.84
VPS28-212ENST00000530836 ZNF330Q9Y3S2 320 aaPredicted RBP26.57■■□□□ 1.84
VPS28-212ENST00000530836 RPAP2Q8IXW5 612 aaPredicted RBP26.57■■□□□ 1.84
VPS28-212ENST00000530836 MTFR1LQ9H019 292 aa26.57■■□□□ 1.84
VPS28-212ENST00000530836 IBTKQ9P2D0 1353 aaPredicted RBP26.56■■□□□ 1.84
VPS28-212ENST00000530836 MYL6BP14649 208 aa26.56■■□□□ 1.84
VPS28-212ENST00000530836 BEND3Q5T5X7 828 aa26.56■■□□□ 1.84
VPS28-212ENST00000530836 LRP10Q7Z4F1 713 aa26.56■■□□□ 1.84
VPS28-212ENST00000530836 CASZ1Q86V15 1759 aa26.56■■□□□ 1.84
VPS28-212ENST00000530836 ALDH1L1O75891 902 aa26.55■■□□□ 1.84
VPS28-212ENST00000530836 MEIS3Q99687 375 aa26.55■■□□□ 1.84
VPS28-212ENST00000530836 NARFQ9UHQ1 456 aa26.55■■□□□ 1.84
VPS28-212ENST00000530836 MAP3K2Q9Y2U5 619 aa26.55■■□□□ 1.84
VPS28-212ENST00000530836 ZPR1O75312 459 aa26.54■■□□□ 1.84
VPS28-212ENST00000530836 USP42Q9H9J4 1324 aaKnown RBP26.54■■□□□ 1.84
VPS28-212ENST00000530836 COPS6Q7L5N1 327 aa26.54■■□□□ 1.84
VPS28-212ENST00000530836 XAGE3Q8WTP9 111 aa26.54■■□□□ 1.84
VPS28-212ENST00000530836 SRP68Q9UHB9 627 aaKnown RBP26.54■■□□□ 1.84
VPS28-212ENST00000530836 ATF5Q9Y2D1 282 aaPredicted RBP26.54■■□□□ 1.84
VPS28-212ENST00000530836 GNAI2P04899 355 aa26.53■■□□□ 1.84
VPS28-212ENST00000530836 RIC3Q7Z5B4 369 aa26.53■■□□□ 1.84
VPS28-212ENST00000530836 TBC1D2BQ9UPU7 963 aa26.53■■□□□ 1.84
VPS28-212ENST00000530836 HDAC5Q9UQL6 1122 aa26.53■■□□□ 1.84
VPS28-212ENST00000530836 GYS1P13807 737 aa26.52■■□□□ 1.84
VPS28-212ENST00000530836 AIMP1Q12904 312 aaKnown RBP26.52■■□□□ 1.84
VPS28-212ENST00000530836 ANKRD13DQ6ZTN6 518 aa26.52■■□□□ 1.84
VPS28-212ENST00000530836 SMC5Q8IY18 1101 aa26.52■■□□□ 1.84
VPS28-212ENST00000530836 LINS1Q8NG48 757 aa26.52■■□□□ 1.84
VPS28-212ENST00000530836 SPON1Q9HCB6 807 aa26.52■■□□□ 1.84
VPS28-212ENST00000530836 NEXNQ0ZGT2 675 aa26.51■■□□□ 1.83
VPS28-212ENST00000530836 USPL1Q5W0Q7 1092 aa26.51■■□□□ 1.83
VPS28-212ENST00000530836 DZIP3Q86Y13 1208 aaKnown RBP26.51■■□□□ 1.83
VPS28-212ENST00000530836 ANKRD44Q8N8A2 993 aa26.51■■□□□ 1.83
VPS28-212ENST00000530836 GCC1Q96CN9 775 aa26.51■■□□□ 1.83
VPS28-212ENST00000530836 ARXQ96QS3 562 aa26.51■■□□□ 1.83
VPS28-212ENST00000530836 C1orf115Q9H7X2 142 aa26.51■■□□□ 1.83
VPS28-212ENST00000530836 MSL1Q68DK7 614 aa26.5■■□□□ 1.83
VPS28-212ENST00000530836 NLGN1Q8N2Q7 840 aa26.5■■□□□ 1.83
VPS28-212ENST00000530836 USP44Q9H0E7 712 aa26.5■■□□□ 1.83
VPS28-212ENST00000530836 UBTFL1P0CB47 393 aaPredicted RBP26.49■■□□□ 1.83
VPS28-212ENST00000530836 PLBD2Q8NHP8 589 aa26.49■■□□□ 1.83
VPS28-212ENST00000530836 HMMRO75330 724 aa26.48■■□□□ 1.83
VPS28-212ENST00000530836 CAMTA2O94983 1202 aa26.48■■□□□ 1.83
VPS28-212ENST00000530836 CEP85Q6P2H3 762 aa26.48■■□□□ 1.83
VPS28-212ENST00000530836 METTL22Q9BUU2 404 aaPredicted RBP26.48■■□□□ 1.83
VPS28-212ENST00000530836 PTGER2P43116 358 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms