RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-208ENST00000529994 PIP4K2AP48426 406 aaPredicted RBP15.29■□□□□ 0.04
SF3B2-208ENST00000529994 ST5P78524 1137 aa15.29■□□□□ 0.04
SF3B2-208ENST00000529994 CNGB1Q14028 1251 aaPredicted RBP15.29■□□□□ 0.04
SF3B2-208ENST00000529994 EAPPQ56P03 285 aaPredicted RBP15.29■□□□□ 0.04
SF3B2-208ENST00000529994 NPM2Q86SE8 214 aaKnown RBP15.29■□□□□ 0.04
SF3B2-208ENST00000529994 IQCA1LA6NCM1 817 aa15.28■□□□□ 0.04
SF3B2-208ENST00000529994 VEGFBP49765 207 aa15.28■□□□□ 0.04
SF3B2-208ENST00000529994 CC2D1BQ5T0F9 858 aaKnown RBP15.28■□□□□ 0.04
SF3B2-208ENST00000529994 LDHDQ86WU2 507 aa15.28■□□□□ 0.04
SF3B2-208ENST00000529994 AIDAQ96BJ3 306 aa15.28■□□□□ 0.04
SF3B2-208ENST00000529994 MASTLQ96GX5 879 aa15.28■□□□□ 0.04
SF3B2-208ENST00000529994 TEX13AQ9BXU3 409 aaPredicted RBP15.28■□□□□ 0.04
SF3B2-208ENST00000529994 TAF1DQ9H5J8 278 aaPredicted RBP15.28■□□□□ 0.04
SF3B2-208ENST00000529994 BCORQ6W2J9 1755 aa15.28■□□□□ 0.04
SF3B2-208ENST00000529994 ZNF541Q9H0D2 1346 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 GNAT3A8MTJ3 354 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 U2SURPO15042 1029 aaKnown RBP15.27■□□□□ 0.04
SF3B2-208ENST00000529994 KCNQ3O43525 872 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 SOGA3Q5TF21 947 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 OLFM4Q6UX06 510 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 DZIP3Q86Y13 1208 aaKnown RBP15.27■□□□□ 0.04
SF3B2-208ENST00000529994 FMNL2Q96PY5 1086 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 ZNF277Q9NRM2 450 aaPredicted RBP15.27■□□□□ 0.04
SF3B2-208ENST00000529994 CLEC11AQ9Y240 323 aa15.27■□□□□ 0.04
SF3B2-208ENST00000529994 TMEM88BA6NKF7 163 aa15.26■□□□□ 0.03
SF3B2-208ENST00000529994 CTCFP49711 727 aaPredicted RBP15.26■□□□□ 0.03
SF3B2-208ENST00000529994 L3MBTL3Q96JM7 780 aaPredicted RBP15.26■□□□□ 0.03
SF3B2-208ENST00000529994 PRDM10Q9NQV6 1147 aa15.26■□□□□ 0.03
SF3B2-208ENST00000529994 ITGBL1O95965 494 aaPredicted RBP15.25■□□□□ 0.03
SF3B2-208ENST00000529994 LBX1P52954 281 aa15.25■□□□□ 0.03
SF3B2-208ENST00000529994 CCDC93Q567U6 631 aa15.25■□□□□ 0.03
SF3B2-208ENST00000529994 NBPF5PQ86XG9 351 aaPredicted RBP15.25■□□□□ 0.03
SF3B2-208ENST00000529994 C7orf43Q8WVR3 580 aa15.25■□□□□ 0.03
SF3B2-208ENST00000529994 USP16Q9Y5T5 823 aa15.25■□□□□ 0.03
SF3B2-208ENST00000529994 PRAMEF22A3QJZ6 481 aa15.24■□□□□ 0.03
SF3B2-208ENST00000529994 FAM177BA6PVY3 158 aa15.24■□□□□ 0.03
SF3B2-208ENST00000529994 GAS2L2Q8NHY3 880 aa15.24■□□□□ 0.03
SF3B2-208ENST00000529994 RNF123Q5XPI4 1314 aa15.23■□□□□ 0.03
SF3B2-208ENST00000529994 BTBD11A6QL63 1104 aa15.23■□□□□ 0.03
SF3B2-208ENST00000529994 NPR1P16066 1061 aa15.23■□□□□ 0.03
SF3B2-208ENST00000529994 FKBP4Q02790 459 aaKnown RBP eCLIP15.23■□□□□ 0.03
SF3B2-208ENST00000529994 MAP1SQ66K74 1059 aaPredicted RBP15.23■□□□□ 0.03
SF3B2-208ENST00000529994 WBP1LQ9NX94 342 aa15.23■□□□□ 0.03
SF3B2-208ENST00000529994 HACL1Q9UJ83 578 aa15.23■□□□□ 0.03
SF3B2-208ENST00000529994 KIF7Q2M1P5 1343 aa15.22■□□□□ 0.03
SF3B2-208ENST00000529994 COL3A1P02461 1466 aaPredicted RBP15.22■□□□□ 0.03
SF3B2-208ENST00000529994 EPHX2P34913 555 aa15.22■□□□□ 0.03
SF3B2-208ENST00000529994 ADAMTSL1Q8N6G6 1762 aa15.21■□□□□ 0.03
SF3B2-208ENST00000529994 CNTROBQ8N137 903 aa15.21■□□□□ 0.03
SF3B2-208ENST00000529994 PHACTR3Q96KR7 559 aa15.21■□□□□ 0.03
SF3B2-208ENST00000529994 PER1O15534 1290 aaPredicted RBP15.2■□□□□ 0.02
SF3B2-208ENST00000529994 DEFB115Q30KQ5 88 aa15.2■□□□□ 0.02
SF3B2-208ENST00000529994 SYNE4Q8N205 404 aa15.2■□□□□ 0.02
SF3B2-208ENST00000529994 ABT1Q9ULW3 272 aaKnown RBP15.2■□□□□ 0.02
SF3B2-208ENST00000529994 NIP7Q9Y221 180 aaKnown RBP eCLIP15.2■□□□□ 0.02
SF3B2-208ENST00000529994 CEMIPQ8WUJ3 1361 aa15.2■□□□□ 0.02
SF3B2-208ENST00000529994 HSPA8P11142 646 aaKnown RBP15.19■□□□□ 0.02
SF3B2-208ENST00000529994 IARSP41252 1262 aaKnown RBP15.19■□□□□ 0.02
SF3B2-208ENST00000529994 CLEC4GQ6UXB4 293 aa15.19■□□□□ 0.02
SF3B2-208ENST00000529994 TPTE2Q6XPS3 522 aa15.19■□□□□ 0.02
SF3B2-208ENST00000529994 PNMA8AQ86V59 439 aaPredicted RBP15.19■□□□□ 0.02
SF3B2-208ENST00000529994 ZNF652Q9Y2D9 606 aa15.19■□□□□ 0.02
SF3B2-208ENST00000529994 WDR33Q9C0J8 1336 aaKnown RBP15.18■□□□□ 0.02
SF3B2-208ENST00000529994 KLRG2A4D1S0 409 aaPredicted RBP15.18■□□□□ 0.02
SF3B2-208ENST00000529994 RASSF10A6NK89 507 aa15.18■□□□□ 0.02
SF3B2-208ENST00000529994 PRKAR2BP31323 418 aa15.18■□□□□ 0.02
SF3B2-208ENST00000529994 FMR1Q06787 632 aaKnown RBP eCLIP15.18■□□□□ 0.021e-6■□□□□ 9.5
SF3B2-208ENST00000529994 RTKN2Q8IZC4 609 aa15.18■□□□□ 0.02
SF3B2-208ENST00000529994 ABHD8Q96I13 439 aa15.18■□□□□ 0.02
SF3B2-208ENST00000529994 GJA3Q9Y6H8 435 aa15.18■□□□□ 0.02
SF3B2-208ENST00000529994 NBPF26B4DH59 902 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 FZD9O00144 591 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 GRM1Q13255 1194 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 HLFQ16534 295 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 FAM161AQ3B820 660 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 NBPF10Q6P3W6 841 aaKnown RBP15.17■□□□□ 0.02
SF3B2-208ENST00000529994 PAXIP1Q6ZW49 1069 aaPredicted RBP15.17■□□□□ 0.02
SF3B2-208ENST00000529994 MCM10Q7L590 875 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 NBPF15Q8N660 670 aa15.17■□□□□ 0.02
SF3B2-208ENST00000529994 SNRPA1P09661 255 aaKnown RBP15.16■□□□□ 0.02
SF3B2-208ENST00000529994 GTF2E1P29083 439 aaPredicted RBP15.16■□□□□ 0.02
SF3B2-208ENST00000529994 GPC2Q8N158 579 aa15.16■□□□□ 0.02
SF3B2-208ENST00000529994 ALDH1B1P30837 517 aa15.15■□□□□ 0.02
SF3B2-208ENST00000529994 MAP2K1Q02750 393 aaPredicted RBP15.15■□□□□ 0.02
SF3B2-208ENST00000529994 DCTN1Q14203 1278 aa15.15■□□□□ 0.02
SF3B2-208ENST00000529994 JDP2Q8WYK2 163 aa15.15■□□□□ 0.02
SF3B2-208ENST00000529994 DDX21Q9NR30 783 aaKnown RBP eCLIP15.15■□□□□ 0.02
SF3B2-208ENST00000529994 COL4A5P29400 1685 aa15.15■□□□□ 0.02
SF3B2-208ENST00000529994 LTBP1Q14766 1721 aa15.14■□□□□ 0.01
SF3B2-208ENST00000529994 SLC51AQ86UW1 340 aa15.14■□□□□ 0.01
SF3B2-208ENST00000529994 NUTM1Q86Y26 1132 aa15.14■□□□□ 0.01
SF3B2-208ENST00000529994 NGEFQ8N5V2 710 aa15.14■□□□□ 0.01
SF3B2-208ENST00000529994 RSPH6AQ9H0K4 717 aa15.14■□□□□ 0.01
SF3B2-208ENST00000529994 ABCC12Q96J65 1359 aa15.13■□□□□ 0.01
SF3B2-208ENST00000529994 TCERG1O14776 1098 aaKnown RBP15.13■□□□□ 0.01
SF3B2-208ENST00000529994 EPS15P42566 896 aa15.13■□□□□ 0.01
SF3B2-208ENST00000529994 EIF6P56537 245 aaKnown RBP15.13■□□□□ 0.01
SF3B2-208ENST00000529994 RTF1Q92541 710 aaKnown RBP15.13■□□□□ 0.01
SF3B2-208ENST00000529994 TRPM7Q96QT4 1865 aa15.12■□□□□ 0.01
SF3B2-208ENST00000529994 CCDC85CA6NKD9 419 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms