RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PI4KAP1Q8N8J0 262 aa17.01■□□□□ 0.31
USP48-213ENST00000529637 NBPF4Q96M43 638 aa17.01■□□□□ 0.31
USP48-213ENST00000529637 BCL11BQ9C0K0 894 aaPredicted RBP17.01■□□□□ 0.31
USP48-213ENST00000529637 KCNQ3O43525 872 aa17.01■□□□□ 0.31
USP48-213ENST00000529637 LETM1O95202 739 aaPredicted RBP17■□□□□ 0.31
USP48-213ENST00000529637 MCM2P49736 904 aa17■□□□□ 0.31
USP48-213ENST00000529637 ANKRD7Q92527 254 aa17■□□□□ 0.31
USP48-213ENST00000529637 TOPAZ1Q8N9V7 1692 aa17■□□□□ 0.31
USP48-213ENST00000529637 TRHP20396 242 aaPredicted RBP17■□□□□ 0.31
USP48-213ENST00000529637 RPAP1Q9BWH6 1393 aaPredicted RBP17■□□□□ 0.31
USP48-213ENST00000529637 NAA30Q147X3 362 aaPredicted RBP17■□□□□ 0.31
USP48-213ENST00000529637 WDR33Q9C0J8 1336 aaKnown RBP16.99■□□□□ 0.31
USP48-213ENST00000529637 FIBPO43427 364 aa16.99■□□□□ 0.31
USP48-213ENST00000529637 NBPF7P0C2Y1 421 aaPredicted RBP16.99■□□□□ 0.31
USP48-213ENST00000529637 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
USP48-213ENST00000529637 SOS1Q07889 1333 aaPredicted RBP16.99■□□□□ 0.31
USP48-213ENST00000529637 BTBD11A6QL63 1104 aa16.98■□□□□ 0.31
USP48-213ENST00000529637 RHPN1Q8TCX5 695 aa16.98■□□□□ 0.31
USP48-213ENST00000529637 DNAAF4Q8WXU2 420 aa16.98■□□□□ 0.31
USP48-213ENST00000529637 FUCA2Q9BTY2 467 aa16.98■□□□□ 0.31
USP48-213ENST00000529637 NALCNQ8IZF0 1738 aa16.97■□□□□ 0.31
USP48-213ENST00000529637 ZBTB22O15209 634 aa16.97■□□□□ 0.31
USP48-213ENST00000529637 BBXQ8WY36 941 aaPredicted RBP16.97■□□□□ 0.31
USP48-213ENST00000529637 C1orf141Q5JVX7 400 aa16.97■□□□□ 0.31
USP48-213ENST00000529637 IP6K1Q92551 441 aa16.97■□□□□ 0.31
USP48-213ENST00000529637 C9orf78Q9NZ63 289 aaPredicted RBP16.97■□□□□ 0.31
USP48-213ENST00000529637 CTIFO43310 598 aaKnown RBP16.96■□□□□ 0.31
USP48-213ENST00000529637 FMN2Q9NZ56 1722 aa16.96■□□□□ 0.31
USP48-213ENST00000529637 EIF4A1P60842 406 aaKnown RBP16.96■□□□□ 0.31
USP48-213ENST00000529637 NCBP1Q09161 790 aaKnown RBP16.96■□□□□ 0.31
USP48-213ENST00000529637 TMEM87AQ8NBN3 555 aa16.96■□□□□ 0.31
USP48-213ENST00000529637 DIAPH3Q9NSV4 1193 aa16.96■□□□□ 0.31
USP48-213ENST00000529637 PTGS1P23219 599 aa16.95■□□□□ 0.3
USP48-213ENST00000529637 GTF2E1P29083 439 aaPredicted RBP16.95■□□□□ 0.3
USP48-213ENST00000529637 CWC27Q6UX04 472 aaKnown RBP16.95■□□□□ 0.3
USP48-213ENST00000529637 SSH3Q8TE77 659 aa16.95■□□□□ 0.3
USP48-213ENST00000529637 SALL3Q9BXA9 1300 aa16.95■□□□□ 0.3
USP48-213ENST00000529637 PIK3C2AO00443 1686 aa16.95■□□□□ 0.3
USP48-213ENST00000529637 SYT1P21579 422 aa16.95■□□□□ 0.3
USP48-213ENST00000529637 KIF1BPQ96EK5 621 aa16.95■□□□□ 0.3
USP48-213ENST00000529637 UBE2HP62256 183 aa16.94■□□□□ 0.3
USP48-213ENST00000529637 AIMP1Q12904 312 aaKnown RBP16.94■□□□□ 0.3
USP48-213ENST00000529637 CHAF1AQ13111 956 aaPredicted RBP16.94■□□□□ 0.3
USP48-213ENST00000529637 ZSCAN22P10073 491 aaPredicted RBP16.94■□□□□ 0.3
USP48-213ENST00000529637 LRMPQ12912 555 aa16.94■□□□□ 0.3
USP48-213ENST00000529637 PLEKHO1Q53GL0 409 aaPredicted RBP16.94■□□□□ 0.3
USP48-213ENST00000529637 CGNQ9P2M7 1197 aaKnown RBP16.94■□□□□ 0.3
USP48-213ENST00000529637 ANKLE2Q86XL3 938 aa16.94■□□□□ 0.3
USP48-213ENST00000529637 STAP2Q9UGK3 403 aa16.94■□□□□ 0.3
USP48-213ENST00000529637 RAB11FIP3O75154 756 aa16.93■□□□□ 0.3
USP48-213ENST00000529637 CPA1P15085 419 aa16.93■□□□□ 0.3
USP48-213ENST00000529637 ANAPC15P60006 121 aa16.93■□□□□ 0.3
USP48-213ENST00000529637 ZNF771Q7L3S4 317 aaPredicted RBP16.93■□□□□ 0.3
USP48-213ENST00000529637 SPG7Q9UQ90 795 aa16.93■□□□□ 0.3
USP48-213ENST00000529637 CHMP3Q9Y3E7 222 aa16.93■□□□□ 0.3
USP48-213ENST00000529637 CNTROBQ8N137 903 aa16.93■□□□□ 0.3
USP48-213ENST00000529637 C16orf45Q96MC5 204 aaPredicted RBP16.93■□□□□ 0.3
USP48-213ENST00000529637 DNM1Q05193 864 aaKnown RBP16.92■□□□□ 0.3
USP48-213ENST00000529637 BABAM1Q9NWV8 329 aa16.92■□□□□ 0.3
USP48-213ENST00000529637 STX6O43752 255 aa16.92■□□□□ 0.3
USP48-213ENST00000529637 NRBP1Q9UHY1 535 aa16.92■□□□□ 0.3
USP48-213ENST00000529637 ANKARQ7Z5J8 1434 aa16.92■□□□□ 0.3
USP48-213ENST00000529637 PA2G4Q9UQ80 394 aaKnown RBP16.91■□□□□ 0.3
USP48-213ENST00000529637 MAP3K2Q9Y2U5 619 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 ARHGAP23Q9P227 1491 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 CLASRPQ8N2M8 674 aaKnown RBP16.91■□□□□ 0.3
USP48-213ENST00000529637 SLIT1O75093 1534 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 LARGE1O95461 756 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 F13A1P00488 732 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 CWF19L2Q2TBE0 894 aaKnown RBP16.91■□□□□ 0.3
USP48-213ENST00000529637 BEND3Q5T5X7 828 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 KCNH5Q8NCM2 988 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 ORAI2Q96SN7 254 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 CTNNA3Q9UI47 895 aa16.91■□□□□ 0.3
USP48-213ENST00000529637 AK2P54819 239 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 RASEFQ8IZ41 740 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 CHMP4AQ9BY43 222 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 TMEM51Q9NW97 253 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 KCNJ4P48050 445 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 CAMK4Q16566 473 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 HSP90AB4PQ58FF6 505 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 AKAP4Q5JQC9 854 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 RUFY3Q7L099 469 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 LUZP1Q86V48 1076 aa16.9■□□□□ 0.3
USP48-213ENST00000529637 DBF4Q9UBU7 674 aaPredicted RBP16.9■□□□□ 0.3
USP48-213ENST00000529637 PRAMEF22A3QJZ6 481 aa16.89■□□□□ 0.29
USP48-213ENST00000529637 IFIT2P09913 472 aaKnown RBP16.89■□□□□ 0.29
USP48-213ENST00000529637 PROSER3Q2NL68 480 aa16.89■□□□□ 0.29
USP48-213ENST00000529637 CCDC186Q7Z3E2 898 aa16.89■□□□□ 0.29
USP48-213ENST00000529637 DDX54Q8TDD1 881 aaKnown RBP16.89■□□□□ 0.29
USP48-213ENST00000529637 OGFRQ9NZT2 677 aa16.89■□□□□ 0.29
USP48-213ENST00000529637 HSPA4P34932 840 aa16.89■□□□□ 0.29
USP48-213ENST00000529637 GCP02774 474 aa16.89■□□□□ 0.29
USP48-213ENST00000529637 PI4K2BQ8TCG2 481 aa16.88■□□□□ 0.29
USP48-213ENST00000529637 FEZ1Q99689 392 aa16.88■□□□□ 0.29
USP48-213ENST00000529637 POLA2Q14181 598 aa16.88■□□□□ 0.29
USP48-213ENST00000529637 ANKRD24Q8TF21 1146 aa16.88■□□□□ 0.29
USP48-213ENST00000529637 ZC3H6P61129 1189 aaKnown RBP16.87■□□□□ 0.29
USP48-213ENST00000529637 SIL1Q9H173 461 aa16.87■□□□□ 0.29
USP48-213ENST00000529637 SNX14Q9Y5W7 946 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms