RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 ALG1LQ6GMV1 187 aa5.41□□□□□ -1.54
SKP1-209ENST00000522552 PDXDC2PQ6P474 469 aa5.41□□□□□ -1.54
SKP1-209ENST00000522552 RNF19BQ6ZMZ0 732 aa5.41□□□□□ -1.54
SKP1-209ENST00000522552 HS2ST1Q7LGA3 356 aa5.41□□□□□ -1.54
SKP1-209ENST00000522552 MAFGO15525 162 aa5.4□□□□□ -1.54
SKP1-209ENST00000522552 ZBTB24O43167 697 aaPredicted RBP5.4□□□□□ -1.54
SKP1-209ENST00000522552 AAMPQ13685 434 aa5.4□□□□□ -1.54
SKP1-209ENST00000522552 TSHZ1Q6ZSZ6 1077 aa5.4□□□□□ -1.54
SKP1-209ENST00000522552 ADAM32Q8TC27 787 aa5.4□□□□□ -1.54
SKP1-209ENST00000522552 SRPK1Q96SB4 655 aaKnown RBP5.4□□□□□ -1.54
SKP1-209ENST00000522552 SPSB2Q99619 263 aa5.4□□□□□ -1.54
SKP1-209ENST00000522552 CFHR5Q9BXR6 569 aa5.4□□□□□ -1.54
SKP1-209ENST00000522552 A0A0U1RQG5 324 aaPredicted RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 M0R2N6 131 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 FOXO3O43524 673 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 PRC1O43663 620 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 S1PR4O95977 384 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 PAX3P23760 479 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 MZF1P28698 734 aaPredicted RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 PAK2Q13177 524 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 CBLBQ13191 982 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 BIRC2Q13490 618 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 FAM50AQ14320 339 aaKnown RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 FOXD4L6Q3SYB3 417 aaPredicted RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 ODR4Q5SWX8 454 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 IFFO2Q5TF58 517 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 FOXD4L3Q6VB84 417 aaPredicted RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 NIF3L1Q9GZT8 377 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 SAP130Q9H0E3 1048 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 PRDM9Q9NQV7 894 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 TYW1Q9NV66 732 aaKnown RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 GGT7Q9UJ14 662 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 TTF2Q9UNY4 1162 aaKnown RBP5.4□□□□□ -1.55
SKP1-209ENST00000522552 AK5Q9Y6K8 562 aa5.4□□□□□ -1.55
SKP1-209ENST00000522552 ESPNB1AK53 854 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 HMGB1P1B2RPK0 211 aaPredicted RBP5.39□□□□□ -1.55
SKP1-209ENST00000522552 PPEF1O14829 653 aaPredicted RBP5.39□□□□□ -1.55
SKP1-209ENST00000522552 ADH1BP00325 375 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 IGFBP4P22692 258 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 GPRASP2Q96D09 838 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 FRMD6Q96NE9 622 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 RPS6KC1Q96S38 1066 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 ZNF408Q9H9D4 720 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 NEUROD4Q9HD90 331 aa5.39□□□□□ -1.55
SKP1-209ENST00000522552 LAS1LQ9Y4W2 734 aaKnown RBP5.39□□□□□ -1.55
SKP1-209ENST00000522552 SH3BP5O60239 455 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 CTHP32929 405 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 SETQ01105 290 aaPredicted RBP5.38□□□□□ -1.55
SKP1-209ENST00000522552 C4orf46Q504U0 113 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 RNF20Q5VTR2 975 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 ALKBH2Q6NS38 261 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 THAP11Q96EK4 314 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 CCDC136Q96JN2 1154 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 IER2Q9BTL4 223 aa5.38□□□□□ -1.55
SKP1-209ENST00000522552 SLKQ9H2G2 1235 aaPredicted RBP5.38□□□□□ -1.55
SKP1-209ENST00000522552 CDC45O75419 566 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 NEFLP07196 543 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 Q3C1V9 767 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 C16orf46Q6P387 395 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 BRICD5Q6PL45 260 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 GPKOWQ92917 476 aaPredicted RBP eCLIP5.37□□□□□ -1.55
SKP1-209ENST00000522552 SLC6A16Q9GZN6 736 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 KANSL2Q9H9L4 492 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 FANCLQ9NW38 375 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 SNTG2Q9NY99 539 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 SIRPGQ9P1W8 387 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 PTPRNQ16849 979 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 LONRF3Q496Y0 759 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 NME8Q8N427 588 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 FAM160A2Q8N612 972 aaPredicted RBP5.37□□□□□ -1.55
SKP1-209ENST00000522552 PRPF38AQ8NAV1 312 aaKnown RBP5.37□□□□□ -1.55
SKP1-209ENST00000522552 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.37□□□□□ -1.553e-6■■■■■ 28.6
SKP1-209ENST00000522552 RASGRP4Q8TDF6 673 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 FBF1Q8TES7 1133 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 C8orf48Q96LL4 319 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 MAF1Q9H063 256 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 TMX1Q9H3N1 280 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 C12orf49Q9H741 205 aa5.37□□□□□ -1.55
SKP1-209ENST00000522552 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.37□□□□□ -1.55
SKP1-209ENST00000522552 GEMIN8Q9NWZ8 242 aaKnown RBP5.37□□□□□ -1.55
SKP1-209ENST00000522552 THRAP3Q9Y2W1 955 aaKnown RBP5.37□□□□□ -1.55
SKP1-209ENST00000522552 FAM221BA6H8Z2 402 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 RNF223E7ERA6 249 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 TNFRSF10BO14763 440 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 GIGYF1O75420 1035 aaPredicted RBP5.36□□□□□ -1.55
SKP1-209ENST00000522552 SSBP05455 408 aaKnown RBP eCLIP5.36□□□□□ -1.55
SKP1-209ENST00000522552 GGCXP38435 758 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 CHMP4BP1P59074 171 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 RASA3Q14644 834 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 ZFYVE27Q5T4F4 411 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 FERMT3Q86UX7 667 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 SH3TC2Q8TF17 1288 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 SCG3Q8WXD2 468 aaKnown RBP5.36□□□□□ -1.55
SKP1-209ENST00000522552 DEPDC7Q96QD5 511 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 USB1Q9BQ65 265 aaKnown RBP5.36□□□□□ -1.55
SKP1-209ENST00000522552 ARHGAP9Q9BRR9 750 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 STIM2Q9P246 746 aa5.36□□□□□ -1.55
SKP1-209ENST00000522552 V9GY48 417 aaPredicted RBP5.36□□□□□ -1.55
SKP1-209ENST00000522552 EIF4BP23588 611 aaKnown RBP5.35□□□□□ -1.55
SKP1-209ENST00000522552 GYS2P54840 703 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms