RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 RFC4P35249 363 aa12.64□□□□□ -0.39
TOPBP1-209ENST00000513818 USPL1Q5W0Q7 1092 aa12.64□□□□□ -0.39
TOPBP1-209ENST00000513818 TTLL7Q6ZT98 887 aa12.64□□□□□ -0.39
TOPBP1-209ENST00000513818 LRP10Q7Z4F1 713 aa12.64□□□□□ -0.39
TOPBP1-209ENST00000513818 TRMT2AQ8IZ69 625 aaKnown RBP12.64□□□□□ -0.39
TOPBP1-209ENST00000513818 VAMP4O75379 141 aa12.63□□□□□ -0.39
TOPBP1-209ENST00000513818 AIMP1Q12904 312 aaKnown RBP12.63□□□□□ -0.39
TOPBP1-209ENST00000513818 DZIP3Q86Y13 1208 aaKnown RBP12.63□□□□□ -0.39
TOPBP1-209ENST00000513818 ERBB4Q15303 1308 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 ARFGEF2Q9Y6D5 1785 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 CAMTA2O94983 1202 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 FLAD1Q8NFF5 587 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 XAGE3Q8WTP9 111 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 BCL2L13Q9BXK5 485 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 ZBTB3Q9H5J0 574 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 PHAXQ9H814 394 aaKnown RBP12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 BCL2L12Q9HB09 334 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 DDX21Q9NR30 783 aaKnown RBP eCLIP12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 COL24A1Q17RW2 1714 aa12.62□□□□□ -0.39
TOPBP1-209ENST00000513818 GYS1P13807 737 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 HMGB2P26583 209 aaKnown RBP12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 CCDC30Q5VVM6 783 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 COPS6Q7L5N1 327 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 G2E3Q7L622 706 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 NPM2Q86SE8 214 aaKnown RBP12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 ZNF428Q96B54 188 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 MTFR1LQ9H019 292 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 DBF4Q9UBU7 674 aaPredicted RBP12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 NARFQ9UHQ1 456 aa12.61□□□□□ -0.39
TOPBP1-209ENST00000513818 NUP98P52948 1817 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 ZPR1O75312 459 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 POLA2Q14181 598 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 HLFQ16534 295 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 BICDL1Q6ZP65 573 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 STK31Q9BXU1 1019 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 ANKRD36CQ5JPF3 1778 aa12.6□□□□□ -0.39
TOPBP1-209ENST00000513818 LRP5O75197 1615 aa12.59□□□□□ -0.39
TOPBP1-209ENST00000513818 A0A087WZG4 1122 aa12.59□□□□□ -0.39
TOPBP1-209ENST00000513818 KIF6Q6ZMV9 814 aa12.59□□□□□ -0.39
TOPBP1-209ENST00000513818 MAP3K15Q6ZN16 1313 aa12.59□□□□□ -0.39
TOPBP1-209ENST00000513818 MMP10P09238 476 aa12.58□□□□□ -0.4
TOPBP1-209ENST00000513818 PTGER2P43116 358 aa12.58□□□□□ -0.4
TOPBP1-209ENST00000513818 DDR1Q08345 913 aa12.58□□□□□ -0.4
TOPBP1-209ENST00000513818 TBC1D9BQ66K14 1250 aa12.58□□□□□ -0.4
TOPBP1-209ENST00000513818 SSH1Q8WYL5 1049 aa12.58□□□□□ -0.4
TOPBP1-209ENST00000513818 AFDNP55196 1824 aaKnown RBP12.58□□□□□ -0.4
TOPBP1-209ENST00000513818 GPTP24298 496 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 NFIXQ14938 502 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 SLC16A10Q8TF71 515 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 SGIP1Q9BQI5 828 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 SPON1Q9HCB6 807 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 SMC4Q9NTJ3 1288 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 HYPKQ9NX55 129 aa12.57□□□□□ -0.4
TOPBP1-209ENST00000513818 FAM177BA6PVY3 158 aa12.56□□□□□ -0.4
TOPBP1-209ENST00000513818 FLIIQ13045 1269 aa12.56□□□□□ -0.4
TOPBP1-209ENST00000513818 KLHL34Q8N239 644 aa12.56□□□□□ -0.4
TOPBP1-209ENST00000513818 MRPL50Q8N5N7 158 aaKnown RBP12.56□□□□□ -0.4
TOPBP1-209ENST00000513818 ADCY9O60503 1353 aa12.56□□□□□ -0.4
TOPBP1-209ENST00000513818 POLD1P28340 1107 aa12.55□□□□□ -0.4
TOPBP1-209ENST00000513818 CCDC24Q8N4L8 307 aa12.55□□□□□ -0.4
TOPBP1-209ENST00000513818 CACNA1FO60840 1977 aa12.55□□□□□ -0.4
TOPBP1-209ENST00000513818 UBN2Q6ZU65 1347 aa12.55□□□□□ -0.4
TOPBP1-209ENST00000513818 CARMIL3Q8ND23 1372 aa12.55□□□□□ -0.4
TOPBP1-209ENST00000513818 ATP10DQ9P241 1426 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 NRXN2Q9P2S2 1712 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 ATP5J2-PTCD1G3V325 749 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 POLRMTO00411 1230 aaKnown RBP12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 RARSP54136 660 aaKnown RBP12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 FKBP5Q13451 457 aaPredicted RBP12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 RIC3Q7Z5B4 369 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 NLGN1Q8N2Q7 840 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 NIP7Q9Y221 180 aaKnown RBP eCLIP12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 ZNF652Q9Y2D9 606 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 MAP3K2Q9Y2U5 619 aa12.54□□□□□ -0.4
TOPBP1-209ENST00000513818 PI4KAP2A4QPH2 592 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 ERVV-1B6SEH8 477 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 F6X3S4 739 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 BCAR3O75815 825 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 TM4SF1P30408 202 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 GIGYF2Q6Y7W6 1299 aaKnown RBP12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 ANKRD13DQ6ZTN6 518 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 PI4KAP1Q8N8J0 262 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 PLBD2Q8NHP8 589 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 MYD88Q99836 296 aa12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 PPP1R1BQ9UD71 204 aaPredicted RBP12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 TNRC6CQ9HCJ0 1690 aaKnown RBP12.53□□□□□ -0.4
TOPBP1-209ENST00000513818 CT47B1P0C2W7 299 aaPredicted RBP12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 ALDH1L2Q3SY69 923 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 CHMP4AQ9BY43 222 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 TNNQ9UQP3 1299 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 PARP3Q9Y6F1 533 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 ANKRD31Q8N7Z5 1873 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 ABCC12Q96J65 1359 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 C10orf71Q711Q0 1435 aa12.52□□□□□ -0.41
TOPBP1-209ENST00000513818 COL11A2P13942 1736 aaPredicted RBP12.51□□□□□ -0.41
TOPBP1-209ENST00000513818 KIAA1551Q9HCM1 1747 aa12.51□□□□□ -0.41
TOPBP1-209ENST00000513818 DDX58O95786 925 aaKnown RBP12.51□□□□□ -0.41
TOPBP1-209ENST00000513818 SERPINB2P05120 415 aa12.51□□□□□ -0.41
TOPBP1-209ENST00000513818 SETDB2Q96T68 719 aa12.51□□□□□ -0.41
TOPBP1-209ENST00000513818 TCIRG1Q13488 830 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms