RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ANKRD36CQ5JPF3 1778 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 NEURL1BA8MQ27 555 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 NBPF26B4DH59 902 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 ADAMTS2O95450 1211 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 IGKV5-2P06315 115 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 TTC22Q5TAA0 569 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 NBPF14Q5TI25 921 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 NBPF10Q6P3W6 841 aaKnown RBP10.37□□□□□ -0.75
RNF4-220ENST00000513578 PPP1R42Q7Z4L9 355 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 NBPF15Q8N660 670 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 PIGBQ92521 554 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 LRRCC1Q9C099 1032 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 UPF2Q9HAU5 1272 aaKnown RBP10.37□□□□□ -0.75
RNF4-220ENST00000513578 ATG3Q9NT62 314 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 C9orf78Q9NZ63 289 aaPredicted RBP10.37□□□□□ -0.75
RNF4-220ENST00000513578 USP35Q9P2H5 1018 aa10.37□□□□□ -0.75
RNF4-220ENST00000513578 AOX1Q06278 1338 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 SEC24BO95487 1268 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 MYL6BP14649 208 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 GCKRQ14397 625 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 VPS72Q15906 364 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 UNC5CLQ8IV45 518 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 FNBP4Q8N3X1 1017 aaPredicted RBP10.36□□□□□ -0.75
RNF4-220ENST00000513578 STAP2Q9UGK3 403 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 KAT6BQ8WYB5 2073 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 AK9Q5TCS8 1911 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 BCL9LQ86UU0 1499 aa10.36□□□□□ -0.75
RNF4-220ENST00000513578 AIMP1Q12904 312 aaKnown RBP10.35□□□□□ -0.75
RNF4-220ENST00000513578 DDB1Q16531 1140 aa10.35□□□□□ -0.75
RNF4-220ENST00000513578 CWF19L2Q2TBE0 894 aaKnown RBP10.35□□□□□ -0.75
RNF4-220ENST00000513578 TBC1D32Q96NH3 1257 aa10.35□□□□□ -0.75
RNF4-220ENST00000513578 RNF39Q9H2S5 420 aa10.35□□□□□ -0.75
RNF4-220ENST00000513578 THSD7AQ9UPZ6 1657 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 SRGAP3O43295 1099 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 CDC45O75419 566 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 STARD3NLO95772 234 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 GSPT1P15170 499 aaKnown RBP10.34□□□□□ -0.75
RNF4-220ENST00000513578 NPM2Q86SE8 214 aaKnown RBP10.34□□□□□ -0.75
RNF4-220ENST00000513578 ERC1Q8IUD2 1116 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 C16orf71Q8IYS4 520 aaPredicted RBP10.34□□□□□ -0.75
RNF4-220ENST00000513578 KIF1BPQ96EK5 621 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 KAZALD1Q96I82 304 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 MYD88Q99836 296 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 ASAP1Q9ULH1 1129 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 EXOC6BQ9Y2D4 811 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 NUP98P52948 1817 aa10.34□□□□□ -0.75
RNF4-220ENST00000513578 NUTM2BA6NNL0 878 aaPredicted RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 NUTM2EB1AL46 878 aaPredicted RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 H7C1W4 665 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 SMARCA5O60264 1052 aaPredicted RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 PTCD1O75127 700 aaKnown RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 SURF6O75683 361 aaKnown RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 A1BGP04217 495 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 PDE1AP54750 535 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 CASP7P55210 303 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 TRIM28Q13263 835 aaKnown RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 RABL6Q3YEC7 729 aaPredicted RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 NUTM2AQ8IVF1 878 aaPredicted RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 CCDC191Q8NCU4 936 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 RHPN1Q8TCX5 695 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 SUCLG2Q96I99 432 aa10.33□□□□□ -0.76
RNF4-220ENST00000513578 COL5A3P25940 1745 aaPredicted RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 USP42Q9H9J4 1324 aaKnown RBP10.33□□□□□ -0.76
RNF4-220ENST00000513578 RBM25P49756 843 aaKnown RBP10.32□□□□□ -0.76
RNF4-220ENST00000513578 DNAJC10Q8IXB1 793 aa10.32□□□□□ -0.76
RNF4-220ENST00000513578 MARCH10Q8NA82 808 aaPredicted RBP10.32□□□□□ -0.76
RNF4-220ENST00000513578 OTUD7AQ8TE49 926 aaPredicted RBP10.32□□□□□ -0.76
RNF4-220ENST00000513578 ISCA1Q9BUE6 129 aa10.32□□□□□ -0.76
RNF4-220ENST00000513578 CYP19A1P11511 503 aaPredicted RBP10.31□□□□□ -0.76
RNF4-220ENST00000513578 MX1P20591 662 aa10.31□□□□□ -0.76
RNF4-220ENST00000513578 TBC1D9Q6ZT07 1266 aa10.31□□□□□ -0.76
RNF4-220ENST00000513578 TTLL7Q6ZT98 887 aa10.31□□□□□ -0.76
RNF4-220ENST00000513578 BICC1Q9H694 974 aaKnown RBP10.31□□□□□ -0.76
RNF4-220ENST00000513578 COPRSQ9NQ92 184 aa10.31□□□□□ -0.76
RNF4-220ENST00000513578 MYH3P11055 1940 aa10.31□□□□□ -0.76
RNF4-220ENST00000513578 SDSP20132 328 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 IL6STP40189 918 aaPredicted RBP10.3□□□□□ -0.76
RNF4-220ENST00000513578 PRIM1P49642 420 aaKnown RBP10.3□□□□□ -0.76
RNF4-220ENST00000513578 TCIRG1Q13488 830 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 SMARCC1Q92922 1105 aaPredicted RBP10.3□□□□□ -0.76
RNF4-220ENST00000513578 NGLY1Q96IV0 654 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 SLC4A9Q96Q91 983 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 C22orf23Q9BZE7 217 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 CWC25Q9NXE8 425 aaPredicted RBP10.3□□□□□ -0.76
RNF4-220ENST00000513578 NHSQ6T4R5 1651 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 SBF2Q86WG5 1849 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 TTC41PQ6P2S7 1318 aa10.3□□□□□ -0.76
RNF4-220ENST00000513578 MYH14Q7Z406 1995 aaKnown RBP10.29□□□□□ -0.76
RNF4-220ENST00000513578 A0A087WZG4 1122 aa10.29□□□□□ -0.76
RNF4-220ENST00000513578 ERVV-1B6SEH8 477 aa10.29□□□□□ -0.76
RNF4-220ENST00000513578 EPB41L2O43491 1005 aaKnown RBP10.29□□□□□ -0.76
RNF4-220ENST00000513578 RFX5P48382 616 aaPredicted RBP10.29□□□□□ -0.76
RNF4-220ENST00000513578 PIP4K2AP48426 406 aaPredicted RBP10.29□□□□□ -0.76
RNF4-220ENST00000513578 HSP90AB3PQ58FF7 597 aa10.29□□□□□ -0.76
RNF4-220ENST00000513578 CASC1Q6TDU7 716 aa10.29□□□□□ -0.76
RNF4-220ENST00000513578 RBM42Q9BTD8 480 aaKnown RBP10.29□□□□□ -0.76
RNF4-220ENST00000513578 MAP3K15Q6ZN16 1313 aa10.29□□□□□ -0.76
RNF4-220ENST00000513578 APBB1O00213 710 aa10.28□□□□□ -0.76
RNF4-220ENST00000513578 RGL2O15211 777 aa10.28□□□□□ -0.76
RNF4-220ENST00000513578 MFAP1P55081 439 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms