RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 HCN2Q9UL51 889 aa7.3□□□□□ -1.24
NUP54-212ENST00000513248 IQSEC3Q9UPP2 1182 aaPredicted RBP7.3□□□□□ -1.24
NUP54-212ENST00000513248 ATP1A2P50993 1020 aa7.29□□□□□ -1.24
NUP54-212ENST00000513248 CLDN10P78369 228 aa7.29□□□□□ -1.24
NUP54-212ENST00000513248 LAMC2Q13753 1193 aa7.29□□□□□ -1.24
NUP54-212ENST00000513248 ARSJQ5FYB0 599 aaPredicted RBP7.29□□□□□ -1.24
NUP54-212ENST00000513248 AIDAQ96BJ3 306 aa7.29□□□□□ -1.24
NUP54-212ENST00000513248 MKRN1Q9UHC7 482 aaKnown RBP7.29□□□□□ -1.24
NUP54-212ENST00000513248 SERTAD1Q9UHV2 236 aa7.29□□□□□ -1.24
NUP54-212ENST00000513248 DCDC2BA2VCK2 349 aa7.28□□□□□ -1.24
NUP54-212ENST00000513248 SPATA31C1P0DKV0 1188 aa7.28□□□□□ -1.24
NUP54-212ENST00000513248 CD33P20138 364 aa7.28□□□□□ -1.24
NUP54-212ENST00000513248 OGFOD1Q8N543 542 aa7.28□□□□□ -1.24
NUP54-212ENST00000513248 TPCN2Q8NHX9 752 aa7.28□□□□□ -1.24
NUP54-212ENST00000513248 PBXIP1Q96AQ6 731 aa7.28□□□□□ -1.24
NUP54-212ENST00000513248 A6NJY4 79 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 EFSO43281 561 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 PTK7Q13308 1070 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.27□□□□□ -1.25
NUP54-212ENST00000513248 ARXQ96QS3 562 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 ZIC5Q96T25 663 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 KRTAP4-8Q9BYQ9 185 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 ZNF358Q9NW07 568 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 KIAA1024Q9UPX6 916 aa7.27□□□□□ -1.25
NUP54-212ENST00000513248 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.26□□□□□ -1.25
NUP54-212ENST00000513248 FAM196BA6NMK8 535 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 BACH1O14867 736 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 KHNYNO15037 678 aaKnown RBP7.26□□□□□ -1.25
NUP54-212ENST00000513248 PPP1R15AO75807 674 aaPredicted RBP7.26□□□□□ -1.25
NUP54-212ENST00000513248 ATG7O95352 703 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 ELOAQ14241 798 aaKnown RBP7.26□□□□□ -1.25
NUP54-212ENST00000513248 CRTC2Q53ET0 693 aaPredicted RBP7.26□□□□□ -1.25
NUP54-212ENST00000513248 CCDC102BQ68D86 513 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 SIX5Q8N196 739 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 TRIM11Q96F44 468 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 VRTNQ9H8Y1 702 aa7.26□□□□□ -1.25
NUP54-212ENST00000513248 SPDYE3A6NKU9 549 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 ITGB7P26010 798 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 LARGE2Q8N3Y3 721 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 ZNF594Q96JF6 807 aaPredicted RBP7.25□□□□□ -1.25
NUP54-212ENST00000513248 MDFIQ99750 246 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 MARK1Q9P0L2 795 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 PRR12Q9ULL5 1215 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 GJA3Q9Y6H8 435 aa7.25□□□□□ -1.25
NUP54-212ENST00000513248 ELOA3CA0A087WX78 387 aaPredicted RBP7.24□□□□□ -1.25
NUP54-212ENST00000513248 ELOA3DA6NLF2 546 aaPredicted RBP7.24□□□□□ -1.25
NUP54-212ENST00000513248 RASA1P20936 1047 aa7.24□□□□□ -1.25
NUP54-212ENST00000513248 RFX1P22670 979 aa7.24□□□□□ -1.25
NUP54-212ENST00000513248 PCBP4P57723 403 aaKnown RBP7.24□□□□□ -1.25
NUP54-212ENST00000513248 ELOA3BQ3SY89 546 aa7.24□□□□□ -1.25
NUP54-212ENST00000513248 ELOA3Q8NG57 546 aa7.24□□□□□ -1.25
NUP54-212ENST00000513248 PLVAPQ9BX97 442 aa7.24□□□□□ -1.25
NUP54-212ENST00000513248 GPC6Q9Y625 555 aaPredicted RBP7.24□□□□□ -1.25
NUP54-212ENST00000513248 GATA4P43694 442 aa7.23□□□□□ -1.25
NUP54-212ENST00000513248 LARP1Q6PKG0 1096 aaKnown RBP7.23□□□□□ -1.25
NUP54-212ENST00000513248 CABP1Q9NZU7 370 aa7.23□□□□□ -1.25
NUP54-212ENST00000513248 ZMIZ1Q9ULJ6 1067 aa7.23□□□□□ -1.25
NUP54-212ENST00000513248 RBM19Q9Y4C8 960 aaKnown RBP7.23□□□□□ -1.25
NUP54-212ENST00000513248 USP3Q9Y6I4 520 aa7.23□□□□□ -1.25
NUP54-212ENST00000513248 ADARB2-AS1A8MUL3 147 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L15C9J2P7 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L10C9JJH3 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L13C9JLJ4 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L12C9JPN9 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L11C9JVI0 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L21D6R901 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L18D6R9N7 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L22D6RA61 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L17D6RBQ6 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L19D6RCP7 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L20D6RJB6 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 SIN3BO75182 1162 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 ALAS2P22557 587 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 EPHA4P54764 986 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 FAM69CQ0P6D2 419 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 USP17L24Q0WX57 530 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 TNS4Q8IZW8 715 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 SEMA6BQ9H3T3 888 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 PRDM6Q9NQX0 595 aa7.22□□□□□ -1.25
NUP54-212ENST00000513248 SCHIP1Q9P0W5 487 aaPredicted RBP7.22□□□□□ -1.25
NUP54-212ENST00000513248 SFI1A8K8P3 1242 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 M0R2N6 131 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 DOC2BQ14184 412 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 PRRT3Q5FWE3 981 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 BICDL1Q6ZP65 573 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 ARID3AQ99856 593 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 STRN4Q9NRL3 753 aa7.21□□□□□ -1.26
NUP54-212ENST00000513248 TEAD4Q15561 434 aa7.2□□□□□ -1.26
NUP54-212ENST00000513248 CDCA8Q53HL2 280 aa7.2□□□□□ -1.26
NUP54-212ENST00000513248 SYT9Q86SS6 491 aa7.2□□□□□ -1.26
NUP54-212ENST00000513248 ANKMY2Q8IV38 441 aa7.2□□□□□ -1.26
NUP54-212ENST00000513248 SLC9A9Q8IVB4 645 aa7.2□□□□□ -1.26
NUP54-212ENST00000513248 EML1O00423 815 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 TXLNAP40222 546 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 SEC13P55735 322 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 DPYDQ12882 1025 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 ZMYM1Q5SVZ6 1142 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 TSEN2Q8NCE0 465 aaKnown RBP7.19□□□□□ -1.26
NUP54-212ENST00000513248 ZDHHC1Q8WTX9 485 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 TNFRSF25Q93038 417 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 190.3 ms