RNA–Protein interactions for RNA: ENST00000511739.1

USP38-203, Transcript of ubiquitin specific peptidase 38, humanhuman

TSL 2

Gene USP38, Length 6,376 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-203ENST00000511739 CCDC196A0A1B0GTZ2 297 aa6.71□□□□□ -1.33
USP38-203ENST00000511739 EIF3JO75822 258 aaKnown RBP6.71□□□□□ -1.33
USP38-203ENST00000511739 FGFR1OPO95684 399 aaKnown RBP6.71□□□□□ -1.33
USP38-203ENST00000511739 ARL1P40616 181 aaPredicted RBP6.71□□□□□ -1.33
USP38-203ENST00000511739 NBPF14Q5TI25 921 aa6.71□□□□□ -1.33
USP38-203ENST00000511739 GIGYF2Q6Y7W6 1299 aaKnown RBP6.71□□□□□ -1.33
USP38-203ENST00000511739 DDX46Q7L014 1031 aaKnown RBP6.71□□□□□ -1.33
USP38-203ENST00000511739 ASXL1Q8IXJ9 1541 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 PRPF40AO75400 957 aaKnown RBP6.71□□□□□ -1.34
USP38-203ENST00000511739 ST5P78524 1137 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 GCC1Q96CN9 775 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 CABP1Q9NZU7 370 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 CFAP45Q9UL16 551 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 ANKRD18BA2A2Z9 1011 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 NPC1L1Q9UHC9 1359 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 ADGRF5Q8IZF2 1346 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 NOS1P29475 1434 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 ECM2O94769 699 aaPredicted RBP6.71□□□□□ -1.34
USP38-203ENST00000511739 FCHSD2O94868 740 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 IFIT5Q13325 482 aaKnown RBP6.71□□□□□ -1.34
USP38-203ENST00000511739 STXBP4Q6ZWJ1 553 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 CCDC117Q8IWD4 279 aaPredicted RBP6.71□□□□□ -1.34
USP38-203ENST00000511739 BICD1Q96G01 975 aa6.71□□□□□ -1.34
USP38-203ENST00000511739 USP8P40818 1118 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 LMAN1P49257 510 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 OGFOD1Q8N543 542 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 ACTN2P35609 894 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 ARHGAP29Q52LW3 1261 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 SYCP3Q8IZU3 236 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 DISP3Q9P2K9 1392 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 CCDC194A0A1B0GVG4 234 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 NCBP1Q09161 790 aaKnown RBP6.7□□□□□ -1.34
USP38-203ENST00000511739 MBD5Q9P267 1494 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 SMC1AQ14683 1233 aaKnown RBP6.7□□□□□ -1.34
USP38-203ENST00000511739 SPATA32Q96LK8 384 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 CFAP74Q9C0B2 1584 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 PDRG1Q9NUG6 133 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 ATP7AQ04656 1500 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 SMTNL1A8MU46 457 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 B4DLN1 442 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 SLU7O95391 586 aaKnown RBP6.7□□□□□ -1.34
USP38-203ENST00000511739 BAG3O95817 575 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 MRPL12P52815 198 aaKnown RBP6.7□□□□□ -1.34
USP38-203ENST00000511739 UBE4AQ14139 1066 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 CCDC148Q8NFR7 591 aa6.7□□□□□ -1.34
USP38-203ENST00000511739 JAKMIP1Q96N16 626 aaKnown RBP6.7□□□□□ -1.34
USP38-203ENST00000511739 U3KPZ7 1027 aaPredicted RBP6.7□□□□□ -1.34
USP38-203ENST00000511739 TNNT1P13805 278 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 CCDC174Q6PII3 467 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 CWC27Q6UX04 472 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 RAB3IL1Q8TBN0 382 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 COL17A1Q9UMD9 1497 aaPredicted RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 NLRP5P59047 1200 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 BIRC2Q13490 618 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 CCDC178Q5BJE1 867 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 SPTY2D1Q68D10 685 aaPredicted RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 PHAXQ9H814 394 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 CCDC61Q9Y6R9 512 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 WDR33Q9C0J8 1336 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 KDM5DQ9BY66 1539 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 UBAP1LF5GYI3 381 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 TCERG1LQ5VWI1 586 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 UPF3BQ9BZI7 483 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 RNF41Q9H4P4 317 aaPredicted RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 SYNCQ9H7C4 482 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 GOPCQ9HD26 462 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 PREX2Q70Z35 1606 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 IDI1Q13907 227 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 CCDC12Q8WUD4 166 aaPredicted RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 CDC5LQ99459 802 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP38-203ENST00000511739 PRC1O43663 620 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 LMOD1P29536 600 aaPredicted RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 LUZP1Q86V48 1076 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 ZSCAN31Q96LW9 406 aaPredicted RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 TESK2Q96S53 571 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 VAT1LQ9HCJ6 419 aa6.69□□□□□ -1.34
USP38-203ENST00000511739 NOB1Q9ULX3 412 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 NKTRP30414 1462 aaKnown RBP6.69□□□□□ -1.34
USP38-203ENST00000511739 UQCRHP07919 91 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 PIK3C2GO75747 1445 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 CCDC66A2RUB6 948 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 GNAT3A8MTJ3 354 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 STX6O43752 255 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 OTUD6BQ8N6M0 293 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 MYD88Q99836 296 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 IL1RAPL2Q9NP60 686 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.68□□□□□ -1.34
USP38-203ENST00000511739 SPATA31E1Q6ZUB1 1445 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 TOM1O60784 492 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 IFFO1Q0D2I5 559 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 TDRD12Q587J7 1177 aaKnown RBP6.68□□□□□ -1.34
USP38-203ENST00000511739 CCDC82Q8N4S0 544 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 ANKRD36BQ8N2N9 1353 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 A0A087WZG4 1122 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 GCOM1H8Y6P7 765 aaPredicted RBP6.68□□□□□ -1.34
USP38-203ENST00000511739 NDC80O14777 642 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 MYZAPP0CAP1 466 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 CFAP100Q494V2 611 aa6.68□□□□□ -1.34
USP38-203ENST00000511739 KLHL10Q6JEL2 608 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms