RNA–Protein interactions for RNA: ENST00000510171.3

DDX41-211, Transcript of DEAD-box helicase 41, human

TSL 3

Gene DDX41, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-211	ENST00000510171	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.94	□□□□□ -0.18
DDX41-211	ENST00000510171	RTF1	Q92541	710 aa	Known RBP	13.94	□□□□□ -0.18
DDX41-211	ENST00000510171	RSPH6A	Q9H0K4	717 aa		13.94	□□□□□ -0.18
DDX41-211	ENST00000510171	CREBZF	Q9NS37	354 aa		13.94	□□□□□ -0.18
DDX41-211	ENST00000510171	NUDC	Q9Y266	331 aa		13.94	□□□□□ -0.18
DDX41-211	ENST00000510171	ZNF652	Q9Y2D9	606 aa		13.94	□□□□□ -0.18
DDX41-211	ENST00000510171	TPTE2	Q6XPS3	522 aa		13.93	□□□□□ -0.18
DDX41-211	ENST00000510171	SBF1	O95248	1867 aa		13.93	□□□□□ -0.18
DDX41-211	ENST00000510171	PRAMEF22	A3QJZ6	481 aa		13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	IQCA1L	A6NCM1	817 aa		13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	NPR1	P16066	1061 aa		13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	CCDC93	Q567U6	631 aa		13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	C7orf43	Q8WVR3	580 aa		13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	COL3A1	P02461	1466 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	AFDN	P55196	1824 aa	Known RBP	13.92	□□□□□ -0.18
DDX41-211	ENST00000510171	POTEI	P0CG38	1075 aa		13.91	□□□□□ -0.18
DDX41-211	ENST00000510171	POTEJ	P0CG39	1038 aa		13.91	□□□□□ -0.18
DDX41-211	ENST00000510171	MCM10	Q7L590	875 aa		13.91	□□□□□ -0.18
DDX41-211	ENST00000510171	MKRN1	Q9UHC7	482 aa	Known RBP	13.91	□□□□□ -0.18
DDX41-211	ENST00000510171	KLRG2	A4D1S0	409 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	RGL2	O15211	777 aa		13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	LDHD	Q86WU2	507 aa		13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	RTKN2	Q8IZC4	609 aa		13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
DDX41-211	ENST00000510171	HTATSF1	O43719	755 aa	Known RBP	13.89	□□□□□ -0.19
DDX41-211	ENST00000510171	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX41-211	ENST00000510171	UBR2	Q8IWV8	1755 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	FAM177B	A6PVY3	158 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	NBPF26	B4DH59	902 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	GTF2E1	P29083	439 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	ALDH1B1	P30837	517 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	DCTN1	Q14203	1278 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	NBPF10	Q6P3W6	841 aa	Known RBP	13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	NBPF15	Q8N660	670 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	DLEC1	Q9Y238	1755 aa		13.88	□□□□□ -0.19
DDX41-211	ENST00000510171	TAF7	Q15545	349 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-211	ENST00000510171	EAPP	Q56P03	285 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX41-211	ENST00000510171	CLEC11A	Q9Y240	323 aa		13.87	□□□□□ -0.19
DDX41-211	ENST00000510171	TMEM88B	A6NKF7	163 aa		13.86	□□□□□ -0.19
DDX41-211	ENST00000510171	PPP2R1A	P30153	589 aa		13.86	□□□□□ -0.19
DDX41-211	ENST00000510171	OLFM4	Q6UX06	510 aa		13.86	□□□□□ -0.19
DDX41-211	ENST00000510171	SYNE4	Q8N205	404 aa		13.86	□□□□□ -0.19
DDX41-211	ENST00000510171	HACL1	Q9UJ83	578 aa		13.86	□□□□□ -0.19
DDX41-211	ENST00000510171	PASK	Q96RG2	1323 aa		13.86	□□□□□ -0.19
DDX41-211	ENST00000510171	ITGBL1	O95965	494 aa	Predicted RBP	13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	EPHX2	P34913	555 aa		13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	IARS	P41252	1262 aa	Known RBP	13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	HLF	Q16534	295 aa		13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	MIS18A	Q9NYP9	233 aa		13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	ZNF541	Q9H0D2	1346 aa		13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	SCN7A	Q01118	1682 aa		13.85	□□□□□ -0.19
DDX41-211	ENST00000510171	CNTNAP1	P78357	1384 aa		13.84	□□□□□ -0.19
DDX41-211	ENST00000510171	PNMA8A	Q86V59	439 aa	Predicted RBP	13.84	□□□□□ -0.19
DDX41-211	ENST00000510171	NGEF	Q8N5V2	710 aa		13.84	□□□□□ -0.19
DDX41-211	ENST00000510171	NYX	Q9GZU5	481 aa		13.84	□□□□□ -0.19
DDX41-211	ENST00000510171	ANKRD31	Q8N7Z5	1873 aa		13.84	□□□□□ -0.19
DDX41-211	ENST00000510171	TIAM2	Q8IVF5	1701 aa		13.84	□□□□□ -0.19
DDX41-211	ENST00000510171	ERVV-1	B6SEH8	477 aa		13.83	□□□□□ -0.2
DDX41-211	ENST00000510171	FZD9	O00144	591 aa		13.83	□□□□□ -0.2
DDX41-211	ENST00000510171	FOXN1	O15353	648 aa		13.83	□□□□□ -0.2
DDX41-211	ENST00000510171	VEGFB	P49765	207 aa		13.83	□□□□□ -0.2
DDX41-211	ENST00000510171	PNISR	Q8TF01	805 aa	Known RBP	13.83	□□□□□ -0.2
DDX41-211	ENST00000510171	AIDA	Q96BJ3	306 aa		13.83	□□□□□ -0.2
DDX41-211	ENST00000510171	NEFM	P07197	916 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	CC2D2B	Q6DHV5	1058 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	CNTROB	Q8N137	903 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	GPC2	Q8N158	579 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	JDP2	Q8WYK2	163 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	PSMD1	Q99460	953 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	PRDM10	Q9NQV6	1147 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	SLX4	Q8IY92	1834 aa		13.82	□□□□□ -0.2
DDX41-211	ENST00000510171	COL11A2	P13942	1736 aa	Predicted RBP	13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	FER1L6	Q2WGJ9	1857 aa		13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	CTCF	P49711	727 aa	Predicted RBP	13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	EIF6	P56537	245 aa	Known RBP	13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	CRY2	Q49AN0	593 aa		13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	MAP1S	Q66K74	1059 aa	Predicted RBP	13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	NUTM1	Q86Y26	1132 aa		13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	RRP7A	Q9Y3A4	280 aa	Known RBP	13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	RNF123	Q5XPI4	1314 aa		13.81	□□□□□ -0.2
DDX41-211	ENST00000510171	DEFB115	Q30KQ5	88 aa		13.8	□□□□□ -0.2
DDX41-211	ENST00000510171	GRIPAP1	Q4V328	841 aa		13.8	□□□□□ -0.2
DDX41-211	ENST00000510171	KIF6	Q6ZMV9	814 aa		13.8	□□□□□ -0.2
DDX41-211	ENST00000510171	RPGR	Q92834	1020 aa	Known RBP	13.8	□□□□□ -0.2
DDX41-211	ENST00000510171	WBP1L	Q9NX94	342 aa		13.8	□□□□□ -0.2
DDX41-211	ENST00000510171	MAP3K15	Q6ZN16	1313 aa		13.8	□□□□□ -0.2
DDX41-211	ENST00000510171	SIPA1L3	O60292	1781 aa	Predicted RBP	13.79	□□□□□ -0.2
DDX41-211	ENST00000510171	HOXA10	P31260	410 aa	Predicted RBP	13.79	□□□□□ -0.2
DDX41-211	ENST00000510171	EIF4A1	P60842	406 aa	Known RBP	13.79	□□□□□ -0.2
DDX41-211	ENST00000510171	TTLL7	Q6ZT98	887 aa		13.79	□□□□□ -0.2
DDX41-211	ENST00000510171	GJA3	Q9Y6H8	435 aa		13.79	□□□□□ -0.2
DDX41-211	ENST00000510171	RASSF10	A6NK89	507 aa		13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	MYL6B	P14649	208 aa		13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	GPT	P24298	496 aa		13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	LMOD1	P29536	600 aa	Predicted RBP	13.78	□□□□□ -0.2

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