RNA–Protein interactions for RNA: ENST00000502773.5

PDGFC-203, Transcript of platelet derived growth factor C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFC, Length 4,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-203ENST00000502773 PEAK1Q9H792 1746 aa8.9□□□□□ -0.98
PDGFC-203ENST00000502773 KRT24Q2M2I5 525 aa8.9□□□□□ -0.98
PDGFC-203ENST00000502773 HMG20BQ9P0W2 317 aa8.9□□□□□ -0.98
PDGFC-203ENST00000502773 WDR33Q9C0J8 1336 aaKnown RBP8.9□□□□□ -0.98
PDGFC-203ENST00000502773 NEK4P51957 841 aa8.9□□□□□ -0.98
PDGFC-203ENST00000502773 ZC3H6P61129 1189 aaKnown RBP8.9□□□□□ -0.98
PDGFC-203ENST00000502773 ANKRD13DQ6ZTN6 518 aa8.9□□□□□ -0.98
PDGFC-203ENST00000502773 CDCA7Q9BWT1 371 aaPredicted RBP8.9□□□□□ -0.98
PDGFC-203ENST00000502773 GZF1Q9H116 711 aaPredicted RBP8.9□□□□□ -0.98
PDGFC-203ENST00000502773 FBXO3Q9UK99 471 aa8.9□□□□□ -0.98
PDGFC-203ENST00000502773 NFAT5O94916 1531 aa8.9□□□□□ -0.99
PDGFC-203ENST00000502773 CHMLP26374 656 aa8.89□□□□□ -0.99
PDGFC-203ENST00000502773 CLEC17AQ6ZS10 378 aa8.89□□□□□ -0.99
PDGFC-203ENST00000502773 TOM1L2Q6ZVM7 507 aa8.89□□□□□ -0.99
PDGFC-203ENST00000502773 ZCRB1Q8TBF4 217 aaKnown RBP8.89□□□□□ -0.99
PDGFC-203ENST00000502773 METTL22Q9BUU2 404 aaPredicted RBP8.89□□□□□ -0.99
PDGFC-203ENST00000502773 RGS12O14924 1447 aa8.89□□□□□ -0.99
PDGFC-203ENST00000502773 PHKG2P15735 406 aa8.89□□□□□ -0.99
PDGFC-203ENST00000502773 TULP1O00294 542 aaPredicted RBP8.89□□□□□ -0.99
PDGFC-203ENST00000502773 DDX49Q9Y6V7 483 aaKnown RBP8.89□□□□□ -0.99
PDGFC-203ENST00000502773 SPATA31A3Q5VYP0 1347 aa8.89□□□□□ -0.99
PDGFC-203ENST00000502773 USP42Q9H9J4 1324 aaKnown RBP8.89□□□□□ -0.99
PDGFC-203ENST00000502773 SPRYD3Q8NCJ5 442 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 STARD3NLO95772 234 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 GSPT1P15170 499 aaKnown RBP8.88□□□□□ -0.99
PDGFC-203ENST00000502773 MSNP26038 577 aaKnown RBP8.88□□□□□ -0.99
PDGFC-203ENST00000502773 PLBD2Q8NHP8 589 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 LGR6Q9HBX8 967 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 AKAP2Q9Y2D5 859 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 CYP46A1Q9Y6A2 500 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 SMARCA5O60264 1052 aaPredicted RBP8.88□□□□□ -0.99
PDGFC-203ENST00000502773 LRRC37A3O60309 1634 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 HMGB1P09429 215 aaKnown RBP8.88□□□□□ -0.99
PDGFC-203ENST00000502773 KIF6Q6ZMV9 814 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 TM6SF1Q9BZW5 370 aa8.88□□□□□ -0.99
PDGFC-203ENST00000502773 LRRC59Q96AG4 307 aaKnown RBP8.87□□□□□ -0.99
PDGFC-203ENST00000502773 UTYO14607 1347 aa8.87□□□□□ -0.99
PDGFC-203ENST00000502773 IL2RBP14784 551 aa8.87□□□□□ -0.99
PDGFC-203ENST00000502773 RFX7Q2KHR2 1363 aa8.87□□□□□ -0.99
PDGFC-203ENST00000502773 KLHL40Q2TBA0 621 aa8.87□□□□□ -0.99
PDGFC-203ENST00000502773 AACSQ86V21 672 aa8.87□□□□□ -0.99
PDGFC-203ENST00000502773 ATG3Q9NT62 314 aa8.87□□□□□ -0.99
PDGFC-203ENST00000502773 TNPO1Q92973 898 aaKnown RBP8.87□□□□□ -0.99
PDGFC-203ENST00000502773 COL15A1P39059 1388 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 CARD10Q9BWT7 1032 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 PHAXQ9H814 394 aaKnown RBP8.86□□□□□ -0.99
PDGFC-203ENST00000502773 GPR108Q9NPR9 543 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 SMC3Q9UQE7 1217 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 FAM208AQ9UK61 1670 aaKnown RBP8.86□□□□□ -0.99
PDGFC-203ENST00000502773 ZSCAN25Q6NSZ9 544 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 LIMCH1Q9UPQ0 1083 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 AIMP1Q12904 312 aaKnown RBP8.86□□□□□ -0.99
PDGFC-203ENST00000502773 IL17RAQ96F46 866 aa8.86□□□□□ -0.99
PDGFC-203ENST00000502773 CWC25Q9NXE8 425 aaPredicted RBP8.86□□□□□ -0.99
PDGFC-203ENST00000502773 WDR17Q8IZU2 1322 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 XPCQ01831 940 aaPredicted RBP8.85□□□□□ -0.99
PDGFC-203ENST00000502773 CCDC191Q8NCU4 936 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 FSD1Q9BTV5 496 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 DNAJC5Q9H3Z4 198 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 U3KPZ7 1027 aaPredicted RBP8.85□□□□□ -0.99
PDGFC-203ENST00000502773 MED1Q15648 1581 aaPredicted RBP8.85□□□□□ -0.99
PDGFC-203ENST00000502773 GORABQ5T7V8 394 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 C16orf71Q8IYS4 520 aaPredicted RBP8.85□□□□□ -0.99
PDGFC-203ENST00000502773 CTNNA3Q9UI47 895 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 PNMA6EA0A0J9YXQ4 647 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 SGSM2O43147 1006 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 HSPA4P34932 840 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 COPRSQ9NQ92 184 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 TMOD3Q9NYL9 352 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 HEG1Q9ULI3 1381 aa8.85□□□□□ -0.99
PDGFC-203ENST00000502773 IL15P40933 162 aaPredicted RBP8.84□□□□□ -0.99
PDGFC-203ENST00000502773 IL1RAPL2Q9NP60 686 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 PRDM10Q9NQV6 1147 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 LMO7Q8WWI1 1683 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 BRD2P25440 801 aaKnown RBP8.84□□□□□ -0.99
PDGFC-203ENST00000502773 GCKRQ14397 625 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 COPS6Q7L5N1 327 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 XAGE3Q8WTP9 111 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 MYD88Q99836 296 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 SLAIN2Q9P270 581 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 VGLL3A8MV65 326 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 ZFYP08048 801 aaPredicted RBP8.84□□□□□ -0.99
PDGFC-203ENST00000502773 CCDC158Q5M9N0 1113 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 FAM184AQ8NB25 1140 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 NFATC2IPQ8NCF5 419 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 LTN1O94822 1766 aa8.84□□□□□ -0.99
PDGFC-203ENST00000502773 VPS53Q5VIR6 699 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 NUTM1Q86Y26 1132 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 GOLGA6L4A6NEF3 574 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 RGPD8O14715 1765 aaPredicted RBP8.83□□□□□ -1
PDGFC-203ENST00000502773 BAG4O95429 457 aaKnown RBP8.83□□□□□ -1
PDGFC-203ENST00000502773 CEP126Q9P2H0 1117 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 A0A087WZG4 1122 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 NEURL1BA8MQ27 555 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 CCDC173Q0VFZ6 552 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 CCDC57Q2TAC2 916 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.83□□□□□ -1
PDGFC-203ENST00000502773 PDRG1Q9NUG6 133 aa8.83□□□□□ -1
PDGFC-203ENST00000502773 CUL4AQ13619 759 aa8.82□□□□□ -1
PDGFC-203ENST00000502773 NKX1-1Q15270 411 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms