RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 CPDO75976 1380 aa13.45□□□□□ -0.26
CMSS1-208ENST00000496116 MAP4K4O95819 1239 aaPredicted RBP13.45□□□□□ -0.26
CMSS1-208ENST00000496116 CABLES1Q8TDN4 633 aa13.45□□□□□ -0.26
CMSS1-208ENST00000496116 MRC1P22897 1456 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 PKD1L3Q7Z443 1732 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 SGSM2O43147 1006 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 SNRPA1P09661 255 aaKnown RBP13.44□□□□□ -0.26
CMSS1-208ENST00000496116 IFIT2P09913 472 aaKnown RBP13.44□□□□□ -0.26
CMSS1-208ENST00000496116 HSPA4P34932 840 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 MRE11P49959 708 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 TMX3Q96JJ7 454 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 PALD1Q9ULE6 856 aa13.44□□□□□ -0.26
CMSS1-208ENST00000496116 MYL6BP14649 208 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 CHRNA2Q15822 529 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 KIAA1211Q6ZU35 1233 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 ZGPATQ8N5A5 531 aaKnown RBP13.43□□□□□ -0.26
CMSS1-208ENST00000496116 RUFY2Q8WXA3 655 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 SUCLG2Q96I99 432 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 ECHDC1Q9NTX5 307 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 RAD50Q92878 1312 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 G3BP1Q13283 466 aaKnown RBP eCLIP13.43□□□□□ -0.26
CMSS1-208ENST00000496116 ZNF496Q96IT1 587 aaPredicted RBP13.43□□□□□ -0.26
CMSS1-208ENST00000496116 FMNL2Q96PY5 1086 aa13.43□□□□□ -0.26
CMSS1-208ENST00000496116 BICC1Q9H694 974 aaKnown RBP13.43□□□□□ -0.26
CMSS1-208ENST00000496116 XRCC6P12956 609 aaKnown RBP eCLIP13.42□□□□□ -0.26
CMSS1-208ENST00000496116 XAGE3Q8WTP9 111 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 INTS4Q96HW7 963 aaKnown RBP13.42□□□□□ -0.26
CMSS1-208ENST00000496116 ARXQ96QS3 562 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 METTL22Q9BUU2 404 aaPredicted RBP13.42□□□□□ -0.26
CMSS1-208ENST00000496116 NEURL1BA8MQ27 555 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 CYP27B1O15528 508 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 CUL4AQ13619 759 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 KLHL40Q2TBA0 621 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 COPS6Q7L5N1 327 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 DIAPH3Q9NSV4 1193 aa13.42□□□□□ -0.26
CMSS1-208ENST00000496116 PA2G4Q9UQ80 394 aaKnown RBP13.42□□□□□ -0.26
CMSS1-208ENST00000496116 DDX49Q9Y6V7 483 aaKnown RBP13.42□□□□□ -0.26
CMSS1-208ENST00000496116 IGKV5-2P06315 115 aa13.41□□□□□ -0.26
CMSS1-208ENST00000496116 CABP4P57796 275 aa13.41□□□□□ -0.26
CMSS1-208ENST00000496116 MCTP1Q6DN14 999 aa13.41□□□□□ -0.26
CMSS1-208ENST00000496116 AACSQ86V21 672 aa13.41□□□□□ -0.26
CMSS1-208ENST00000496116 GCKRQ14397 625 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 CWC27Q6UX04 472 aaKnown RBP13.4□□□□□ -0.26
CMSS1-208ENST00000496116 ANKRD13DQ6ZTN6 518 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 EVI5LQ96CN4 794 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 KAZALD1Q96I82 304 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 IL25Q9H293 177 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 GRPEL1Q9HAV7 217 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 PKP1Q13835 747 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 MYD88Q99836 296 aa13.4□□□□□ -0.26
CMSS1-208ENST00000496116 LSG1Q9H089 658 aaKnown RBP13.4□□□□□ -0.26
CMSS1-208ENST00000496116 PARP4Q9UKK3 1724 aaKnown RBP13.4□□□□□ -0.26
CMSS1-208ENST00000496116 USP16Q9Y5T5 823 aa13.39□□□□□ -0.27
CMSS1-208ENST00000496116 HIP1O00291 1037 aa13.39□□□□□ -0.27
CMSS1-208ENST00000496116 UPF3BQ9BZI7 483 aaKnown RBP13.39□□□□□ -0.27
CMSS1-208ENST00000496116 LAMB4A4D0S4 1761 aa13.38□□□□□ -0.27
CMSS1-208ENST00000496116 SASH1O94885 1247 aa13.38□□□□□ -0.27
CMSS1-208ENST00000496116 BRINP3Q76B58 766 aa13.38□□□□□ -0.27
CMSS1-208ENST00000496116 PCDH11XQ9BZA7 1347 aa13.38□□□□□ -0.27
CMSS1-208ENST00000496116 PCDH11YQ9BZA8 1340 aa13.38□□□□□ -0.27
CMSS1-208ENST00000496116 XIRP1Q702N8 1843 aaKnown RBP13.38□□□□□ -0.27
CMSS1-208ENST00000496116 LRP10Q7Z4F1 713 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 PRDM11Q9NQV5 511 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 ZDHHC9Q9Y397 364 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 SNX14Q9Y5W7 946 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 WDR17Q8IZU2 1322 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 HSPA2P54652 639 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 NOL8Q76FK4 1167 aaKnown RBP13.37□□□□□ -0.27
CMSS1-208ENST00000496116 FAM43AQ8N2R8 423 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 LMBRD1Q9NUN5 540 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 AFDNP55196 1824 aaKnown RBP13.37□□□□□ -0.27
CMSS1-208ENST00000496116 ERBB4Q15303 1308 aa13.37□□□□□ -0.27
CMSS1-208ENST00000496116 TOM1L2Q6ZVM7 507 aa13.36□□□□□ -0.27
CMSS1-208ENST00000496116 EAF2Q96CJ1 260 aaPredicted RBP13.36□□□□□ -0.27
CMSS1-208ENST00000496116 COL15A1P39059 1388 aa13.36□□□□□ -0.27
CMSS1-208ENST00000496116 ARFGEF2Q9Y6D5 1785 aa13.36□□□□□ -0.27
CMSS1-208ENST00000496116 BRD1O95696 1058 aa13.36□□□□□ -0.27
CMSS1-208ENST00000496116 ZCRB1Q8TBF4 217 aaKnown RBP13.36□□□□□ -0.27
CMSS1-208ENST00000496116 SIL1Q9H173 461 aa13.36□□□□□ -0.27
CMSS1-208ENST00000496116 PLBD2Q8NHP8 589 aa13.35□□□□□ -0.27
CMSS1-208ENST00000496116 PANK2Q9BZ23 570 aa13.35□□□□□ -0.27
CMSS1-208ENST00000496116 CCDC8Q9H0W5 538 aaPredicted RBP13.35□□□□□ -0.27
CMSS1-208ENST00000496116 COPRSQ9NQ92 184 aa13.35□□□□□ -0.27
CMSS1-208ENST00000496116 ERVV-2B6SEH9 535 aa13.34□□□□□ -0.27
CMSS1-208ENST00000496116 SOS2Q07890 1332 aaPredicted RBP13.34□□□□□ -0.27
CMSS1-208ENST00000496116 PRPF40AO75400 957 aaKnown RBP13.34□□□□□ -0.27
CMSS1-208ENST00000496116 NCLP19338 710 aaKnown RBP13.34□□□□□ -0.27
CMSS1-208ENST00000496116 TTC14Q96N46 770 aa13.34□□□□□ -0.27
CMSS1-208ENST00000496116 ZKSCAN1P17029 563 aaPredicted RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 PIP4K2AP48426 406 aaPredicted RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 RABL6Q3YEC7 729 aaPredicted RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 EPHA10Q5JZY3 1008 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 UBE3BQ7Z3V4 1068 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 GAS2L3Q86XJ1 694 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 RASEFQ8IZ41 740 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 LIMCH1Q9UPQ0 1083 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 COL5A2P05997 1499 aaPredicted RBP13.33□□□□□ -0.28
CMSS1-208ENST00000496116 A0A087WZG4 1122 aa13.33□□□□□ -0.28
CMSS1-208ENST00000496116 CASTP20810 708 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms