RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 MAP3K2Q9Y2U5 619 aa24.62■■□□□ 1.53
USP39-218ENST00000493829 UBR3Q6ZT12 1888 aa24.62■■□□□ 1.53
USP39-218ENST00000493829 ABCC4O15439 1325 aa24.62■■□□□ 1.53
USP39-218ENST00000493829 ZNF827Q17R98 1081 aa24.62■■□□□ 1.53
USP39-218ENST00000493829 CCDC125Q86Z20 511 aa24.62■■□□□ 1.53
USP39-218ENST00000493829 UPF1Q92900 1129 aaKnown RBP eCLIP24.62■■□□□ 1.53
USP39-218ENST00000493829 TBC1D2BQ9UPU7 963 aa24.62■■□□□ 1.53
USP39-218ENST00000493829 TUBGCP6Q96RT7 1819 aa24.61■■□□□ 1.53
USP39-218ENST00000493829 DZIP3Q86Y13 1208 aaKnown RBP24.61■■□□□ 1.53
USP39-218ENST00000493829 RTCBQ9Y3I0 505 aaKnown RBP24.61■■□□□ 1.53
USP39-218ENST00000493829 C4AP0C0L4 1744 aa24.61■■□□□ 1.53
USP39-218ENST00000493829 RPS6KA4O75676 772 aa24.6■■□□□ 1.53
USP39-218ENST00000493829 KSR2Q6VAB6 950 aa24.6■■□□□ 1.53
USP39-218ENST00000493829 TMEM57Q8N5G2 664 aa24.6■■□□□ 1.53
USP39-218ENST00000493829 COG6Q9Y2V7 657 aa24.6■■□□□ 1.53
USP39-218ENST00000493829 ANKRD13DQ6ZTN6 518 aa24.59■■□□□ 1.53
USP39-218ENST00000493829 DNAAF4Q8WXU2 420 aa24.59■■□□□ 1.53
USP39-218ENST00000493829 CRBNQ96SW2 442 aa24.59■■□□□ 1.53
USP39-218ENST00000493829 ITPRIPQ8IWB1 547 aa24.59■■□□□ 1.53
USP39-218ENST00000493829 PDE3AQ14432 1141 aa24.58■■□□□ 1.53
USP39-218ENST00000493829 PLBD2Q8NHP8 589 aa24.58■■□□□ 1.53
USP39-218ENST00000493829 BCORQ6W2J9 1755 aa24.58■■□□□ 1.53
USP39-218ENST00000493829 N4BP2Q86UW6 1770 aaPredicted RBP24.58■■□□□ 1.53
USP39-218ENST00000493829 SCN7AQ01118 1682 aa24.57■■□□□ 1.52
USP39-218ENST00000493829 MS4A1P11836 297 aa24.57■■□□□ 1.52
USP39-218ENST00000493829 ANO8Q9HCE9 1232 aaPredicted RBP24.57■■□□□ 1.52
USP39-218ENST00000493829 TFCP2L1Q9NZI6 479 aa24.57■■□□□ 1.52
USP39-218ENST00000493829 PXDNLA1KZ92 1463 aa24.57■■□□□ 1.52
USP39-218ENST00000493829 MAP3K15Q6ZN16 1313 aa24.57■■□□□ 1.52
USP39-218ENST00000493829 FKBP8Q14318 412 aa24.56■■□□□ 1.52
USP39-218ENST00000493829 AKT1S1Q96B36 256 aa24.56■■□□□ 1.52
USP39-218ENST00000493829 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.56■■□□□ 1.52
USP39-218ENST00000493829 MYD88Q99836 296 aa24.56■■□□□ 1.52
USP39-218ENST00000493829 AFDNP55196 1824 aaKnown RBP24.54■■□□□ 1.52
USP39-218ENST00000493829 A0A087WZG4 1122 aa24.54■■□□□ 1.52
USP39-218ENST00000493829 HLFQ16534 295 aa24.54■■□□□ 1.52
USP39-218ENST00000493829 ARHGEF1Q92888 912 aaKnown RBP24.54■■□□□ 1.52
USP39-218ENST00000493829 SRP68Q9UHB9 627 aaKnown RBP24.54■■□□□ 1.52
USP39-218ENST00000493829 MVPQ14764 893 aaKnown RBP24.53■■□□□ 1.52
USP39-218ENST00000493829 TRAPPC3LQ5T215 181 aa24.53■■□□□ 1.52
USP39-218ENST00000493829 EXOC6Q8TAG9 804 aa24.53■■□□□ 1.52
USP39-218ENST00000493829 NUP98P52948 1817 aa24.53■■□□□ 1.52
USP39-218ENST00000493829 ATP5J2-PTCD1G3V325 749 aa24.53■■□□□ 1.52
USP39-218ENST00000493829 CAMTA2O94983 1202 aa24.53■■□□□ 1.52
USP39-218ENST00000493829 CWF19L2Q2TBE0 894 aaKnown RBP24.53■■□□□ 1.52
USP39-218ENST00000493829 METTL22Q9BUU2 404 aaPredicted RBP24.53■■□□□ 1.52
USP39-218ENST00000493829 ANKRD36CQ5JPF3 1778 aa24.52■■□□□ 1.52
USP39-218ENST00000493829 HMGB2P26583 209 aaKnown RBP24.52■■□□□ 1.52
USP39-218ENST00000493829 RFC4P35249 363 aa24.52■■□□□ 1.52
USP39-218ENST00000493829 CCT4P50991 539 aaKnown RBP24.52■■□□□ 1.52
USP39-218ENST00000493829 STK32BQ9NY57 414 aa24.52■■□□□ 1.52
USP39-218ENST00000493829 ATP10DQ9P241 1426 aa24.51■■□□□ 1.51
USP39-218ENST00000493829 MSH5O43196 834 aa24.51■■□□□ 1.51
USP39-218ENST00000493829 SSFA2P28290 1259 aa24.51■■□□□ 1.51
USP39-218ENST00000493829 NEXNQ0ZGT2 675 aa24.51■■□□□ 1.51
USP39-218ENST00000493829 BEND3Q5T5X7 828 aa24.51■■□□□ 1.51
USP39-218ENST00000493829 INTS3Q68E01 1043 aaKnown RBP24.51■■□□□ 1.51
USP39-218ENST00000493829 SRCIN1Q9C0H9 1055 aa24.51■■□□□ 1.51
USP39-218ENST00000493829 USPL1Q5W0Q7 1092 aa24.5■■□□□ 1.51
USP39-218ENST00000493829 ZPR1O75312 459 aa24.5■■□□□ 1.51
USP39-218ENST00000493829 GPTP24298 496 aa24.5■■□□□ 1.51
USP39-218ENST00000493829 IGKV5-2P06315 115 aa24.49■■□□□ 1.51
USP39-218ENST00000493829 ADRA2BP18089 450 aa24.49■■□□□ 1.51
USP39-218ENST00000493829 GIGYF2Q6Y7W6 1299 aaKnown RBP24.49■■□□□ 1.51
USP39-218ENST00000493829 NARFQ9UHQ1 456 aa24.49■■□□□ 1.51
USP39-218ENST00000493829 ERVV-1B6SEH8 477 aa24.48■■□□□ 1.51
USP39-218ENST00000493829 SLC15A2Q16348 729 aa24.48■■□□□ 1.51
USP39-218ENST00000493829 LINS1Q8NG48 757 aa24.48■■□□□ 1.51
USP39-218ENST00000493829 USP42Q9H9J4 1324 aaKnown RBP24.48■■□□□ 1.51
USP39-218ENST00000493829 PNPLA7Q6ZV29 1317 aa24.47■■□□□ 1.51
USP39-218ENST00000493829 NEURL1BA8MQ27 555 aa24.46■■□□□ 1.51
USP39-218ENST00000493829 TCIRG1Q13488 830 aa24.46■■□□□ 1.51
USP39-218ENST00000493829 COL23A1Q86Y22 540 aaPredicted RBP24.46■■□□□ 1.51
USP39-218ENST00000493829 DDX19BQ9UMR2 479 aa24.46■■□□□ 1.51
USP39-218ENST00000493829 BCL2L12Q9HB09 334 aa24.46■■□□□ 1.51
USP39-218ENST00000493829 ZNF652Q9Y2D9 606 aa24.46■■□□□ 1.51
USP39-218ENST00000493829 BICDL1Q6ZP65 573 aa24.45■■□□□ 1.5
USP39-218ENST00000493829 MEIS3Q99687 375 aa24.45■■□□□ 1.5
USP39-218ENST00000493829 QSER1Q2KHR3 1735 aa24.45■■□□□ 1.5
USP39-218ENST00000493829 HSP90AB3PQ58FF7 597 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 UBN2Q6ZU65 1347 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 FAM177BA6PVY3 158 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 ALDH1L1O75891 902 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 JARID2Q92833 1246 aaPredicted RBP24.43■■□□□ 1.5
USP39-218ENST00000493829 ISCA1Q9BUE6 129 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 C1orf115Q9H7X2 142 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 NIP7Q9Y221 180 aaKnown RBP eCLIP24.43■■□□□ 1.5
USP39-218ENST00000493829 GTF3C3Q9Y5Q9 886 aa24.43■■□□□ 1.5
USP39-218ENST00000493829 GCKRQ14397 625 aa24.42■■□□□ 1.5
USP39-218ENST00000493829 TBC1D9BQ66K14 1250 aa24.42■■□□□ 1.5
USP39-218ENST00000493829 CWC25Q9NXE8 425 aaPredicted RBP24.42■■□□□ 1.5
USP39-218ENST00000493829 ZBTB7BO15156 539 aaPredicted RBP24.41■■□□□ 1.5
USP39-218ENST00000493829 RTL5Q5HYW3 569 aaPredicted RBP24.41■■□□□ 1.5
USP39-218ENST00000493829 C9orf78Q9NZ63 289 aaPredicted RBP24.41■■□□□ 1.5
USP39-218ENST00000493829 GYS1P13807 737 aa24.4■■□□□ 1.5
USP39-218ENST00000493829 FLAD1Q8NFF5 587 aa24.4■■□□□ 1.5
USP39-218ENST00000493829 NLRP10Q86W26 655 aa24.4■■□□□ 1.5
USP39-218ENST00000493829 ZNF34Q8IZ26 560 aa24.4■■□□□ 1.5
USP39-218ENST00000493829 USP44Q9H0E7 712 aa24.4■■□□□ 1.5
USP39-218ENST00000493829 NBPF7P0C2Y1 421 aaPredicted RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms