RNA–Protein interactions for RNA: ENST00000493792.1

TRAPPC12-222, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-222	ENST00000493792	SOS1	Q07889	1333 aa	Predicted RBP	13.59	□□□□□ -0.23
TRAPPC12-222	ENST00000493792	COL15A1	P39059	1388 aa		13.58	□□□□□ -0.23
TRAPPC12-222	ENST00000493792	KDM3B	Q7LBC6	1761 aa		13.58	□□□□□ -0.23
TRAPPC12-222	ENST00000493792	SALL2	Q9Y467	1007 aa	Predicted RBP	13.58	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	EIF4A1	P60842	406 aa	Known RBP	13.57	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	USPL1	Q5W0Q7	1092 aa		13.57	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	ARFGEF1	Q9Y6D6	1849 aa		13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792		A0A087WZG4	1122 aa		13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	NFKBIE	O00221	500 aa		13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	CALD1	Q05682	793 aa	Known RBP	13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	NFIX	Q14938	502 aa		13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	DIEXF	Q68CQ4	756 aa	Known RBP	13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	NARF	Q9UHQ1	456 aa		13.56	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	EIF2S2	P20042	333 aa	Known RBP	13.55	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	NGEF	Q8N5V2	710 aa		13.55	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	BCL2L12	Q9HB09	334 aa		13.55	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	BABAM1	Q9NWV8	329 aa		13.55	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	TBC1D2B	Q9UPU7	963 aa		13.55	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	CHL1	O00533	1208 aa		13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	IL6ST	P40189	918 aa	Predicted RBP	13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	EIF5	P55010	431 aa	Known RBP	13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	DZIP3	Q86Y13	1208 aa	Known RBP	13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	TTLL6	Q8N841	843 aa		13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	NECTIN2	Q92692	538 aa		13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	SBF1	O95248	1867 aa		13.54	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	LAMB4	A4D0S4	1761 aa		13.53	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	SLC34A2	O95436	690 aa		13.53	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	MYL6B	P14649	208 aa		13.53	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	BICDL1	Q6ZP65	573 aa		13.53	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	CFAP44	Q96MT7	982 aa		13.53	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	CREBZF	Q9NS37	354 aa		13.53	□□□□□ -0.24
TRAPPC12-222	ENST00000493792	FOXN1	O15353	648 aa		13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	SERPINB2	P05120	415 aa		13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	GNAI1	P63096	354 aa		13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	KRT24	Q2M2I5	525 aa		13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	MBIP	Q9NS73	344 aa		13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	IFT57	Q9NWB7	429 aa		13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	MKRN1	Q9UHC7	482 aa	Known RBP	13.52	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	NBPF26	B4DH59	902 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	POTEI	P0CG38	1075 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	POTEJ	P0CG39	1038 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	DPY19L2	Q6NUT2	758 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	NBPF10	Q6P3W6	841 aa	Known RBP	13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	C2CD5	Q86YS7	1000 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	NBPF15	Q8N660	670 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	PRDM10	Q9NQV6	1147 aa		13.51	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.5	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	CHADL	Q6NUI6	762 aa		13.5	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	WWC1	Q8IX03	1113 aa		13.5	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	CCER2	I3L3R5	266 aa		13.49	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ELL2	O00472	640 aa	Predicted RBP	13.49	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	NPHP1	O15259	732 aa		13.49	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	CCDC27	Q2M243	656 aa		13.49	□□□□□ -0.25
TRAPPC12-222	ENST00000493792		H0YIN7	160 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	CAMTA2	O94983	1202 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ZNF853	P0CG23	659 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	HDGFL1	Q5TGJ6	251 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	DUSP27	Q5VZP5	1158 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	TBC1D9B	Q66K14	1250 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	KIF6	Q6ZMV9	814 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	MIER1	Q8N108	512 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	TSR2	Q969E8	191 aa	Known RBP	13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ZNF652	Q9Y2D9	606 aa		13.48	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	CARMIL3	Q8ND23	1372 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	SCN7A	Q01118	1682 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ERBB4	Q15303	1308 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	PASK	Q96RG2	1323 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	DDN	O94850	711 aa	Predicted RBP	13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ANXA1	P04083	346 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	AIMP1	Q12904	312 aa	Known RBP	13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ERFE	Q4G0M1	354 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	SETDB2	Q96T68	719 aa		13.47	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	CNTNAP1	P78357	1384 aa		13.46	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	C21orf2	O43822	256 aa		13.46	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ITGBL1	O95965	494 aa	Predicted RBP	13.46	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	VEGFB	P49765	207 aa		13.46	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	ZBTB3	Q9H5J0	574 aa		13.46	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	WBP1L	Q9NX94	342 aa		13.46	□□□□□ -0.25
TRAPPC12-222	ENST00000493792	NRXN2	Q9P2S2	1712 aa		13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	FAM177B	A6PVY3	158 aa		13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	CTCF	P49711	727 aa	Predicted RBP	13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	PROSER3	Q2NL68	480 aa		13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	TTLL7	Q6ZT98	887 aa		13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	CHPF2	Q9P2E5	772 aa		13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	BCOR	Q6W2J9	1755 aa		13.45	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	IL16	Q14005	1332 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	MAP3K15	Q6ZN16	1313 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	HOXB7	P09629	217 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	HLF	Q16534	295 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	NCBP3	Q53F19	620 aa	Known RBP	13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	WDR63	Q8IWG1	891 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	CCDC24	Q8N4L8	307 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	C8orf58	Q8NAV2	365 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	BRIP1	Q9BX63	1249 aa		13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	LTBP3	Q9NS15	1303 aa		13.43	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	LBX1	P52954	281 aa		13.43	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	PDIA6	Q15084	440 aa		13.43	□□□□□ -0.26
TRAPPC12-222	ENST00000493792	CLEC4G	Q6UXB4	293 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms