RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 SMIM5Q71RC9 77 aa28.52■■■□□ 2.16
USF3-203ENST00000491165 AMIGO3Q86WK7 504 aa28.52■■■□□ 2.16
USF3-203ENST00000491165 XAGE3Q8WTP9 111 aa28.52■■■□□ 2.16
USF3-203ENST00000491165 ARHGAP45Q92619 1136 aa28.51■■■□□ 2.15
USF3-203ENST00000491165 CCDC87Q9NVE4 849 aa28.51■■■□□ 2.15
USF3-203ENST00000491165 ZNF330Q9Y3S2 320 aaPredicted RBP28.51■■■□□ 2.15
USF3-203ENST00000491165 PTPRCP08575 1304 aa28.51■■■□□ 2.15
USF3-203ENST00000491165 EN1Q05925 392 aaPredicted RBP28.5■■■□□ 2.15
USF3-203ENST00000491165 ADCY9O60503 1353 aa28.5■■■□□ 2.15
USF3-203ENST00000491165 TTLL7Q6ZT98 887 aa28.49■■■□□ 2.15
USF3-203ENST00000491165 SLC27A3Q5K4L6 730 aa28.49■■■□□ 2.15
USF3-203ENST00000491165 DEFB132Q7Z7B7 95 aa28.49■■■□□ 2.15
USF3-203ENST00000491165 IPO8O15397 1037 aaKnown RBP28.48■■■□□ 2.15
USF3-203ENST00000491165 PI4KAP2A4QPH2 592 aa28.48■■■□□ 2.15
USF3-203ENST00000491165 EZH2Q15910 746 aaKnown RBP28.48■■■□□ 2.15
USF3-203ENST00000491165 PI4KAP1Q8N8J0 262 aa28.48■■■□□ 2.15
USF3-203ENST00000491165 CNTNAP4Q9C0A0 1308 aa28.48■■■□□ 2.15
USF3-203ENST00000491165 ARFGEF2Q9Y6D5 1785 aa28.47■■■□□ 2.15
USF3-203ENST00000491165 DZIP1LQ8IYY4 767 aaKnown RBP28.47■■■□□ 2.15
USF3-203ENST00000491165 CAMKK2Q96RR4 588 aa28.47■■■□□ 2.15
USF3-203ENST00000491165 PCDHB15Q9Y5E8 787 aa28.47■■■□□ 2.15
USF3-203ENST00000491165 ABCC4O15439 1325 aa28.47■■■□□ 2.15
USF3-203ENST00000491165 NUP188Q5SRE5 1749 aa28.47■■■□□ 2.15
USF3-203ENST00000491165 EIF5P55010 431 aaKnown RBP28.46■■■□□ 2.15
USF3-203ENST00000491165 IL6STP40189 918 aaPredicted RBP28.45■■■□□ 2.15
USF3-203ENST00000491165 TMEM57Q8N5G2 664 aa28.45■■■□□ 2.15
USF3-203ENST00000491165 UBR3Q6ZT12 1888 aa28.45■■■□□ 2.14
USF3-203ENST00000491165 FTSJ3Q8IY81 847 aaKnown RBP28.44■■■□□ 2.14
USF3-203ENST00000491165 API5Q9BZZ5 524 aaKnown RBP28.44■■■□□ 2.14
USF3-203ENST00000491165 RC3H1Q5TC82 1133 aaKnown RBP28.43■■■□□ 2.14
USF3-203ENST00000491165 ILDR2Q71H61 639 aa28.43■■■□□ 2.14
USF3-203ENST00000491165 RWDD1Q9H446 243 aaPredicted RBP28.43■■■□□ 2.14
USF3-203ENST00000491165 MAP3K2Q9Y2U5 619 aa28.43■■■□□ 2.14
USF3-203ENST00000491165 GNPATO15228 680 aa28.42■■■□□ 2.14
USF3-203ENST00000491165 SLC4A10Q6U841 1118 aa28.42■■■□□ 2.14
USF3-203ENST00000491165 N4BP2Q86UW6 1770 aaPredicted RBP28.42■■■□□ 2.14
USF3-203ENST00000491165 KSR2Q6VAB6 950 aa28.42■■■□□ 2.14
USF3-203ENST00000491165 ANKRD13DQ6ZTN6 518 aa28.42■■■□□ 2.14
USF3-203ENST00000491165 GSE1Q14687 1217 aa28.41■■■□□ 2.14
USF3-203ENST00000491165 ZBTB3Q9H5J0 574 aa28.41■■■□□ 2.14
USF3-203ENST00000491165 TBC1D2BQ9UPU7 963 aa28.41■■■□□ 2.14
USF3-203ENST00000491165 COL15A1P39059 1388 aa28.41■■■□□ 2.14
USF3-203ENST00000491165 MVPQ14764 893 aaKnown RBP28.4■■■□□ 2.14
USF3-203ENST00000491165 TUBGCP6Q96RT7 1819 aa28.4■■■□□ 2.14
USF3-203ENST00000491165 C4AP0C0L4 1744 aa28.4■■■□□ 2.14
USF3-203ENST00000491165 SEC24BO95487 1268 aa28.4■■■□□ 2.14
USF3-203ENST00000491165 SF3B2Q13435 895 aaKnown RBP28.4■■■□□ 2.14
USF3-203ENST00000491165 ZNF827Q17R98 1081 aa28.4■■■□□ 2.14
USF3-203ENST00000491165 DNAAF4Q8WXU2 420 aa28.39■■■□□ 2.14
USF3-203ENST00000491165 ARXQ96QS3 562 aa28.39■■■□□ 2.14
USF3-203ENST00000491165 PDZRN3Q9UPQ7 1066 aa28.39■■■□□ 2.13
USF3-203ENST00000491165 RPS6KA4O75676 772 aa28.38■■■□□ 2.13
USF3-203ENST00000491165 BAG6P46379 1132 aa28.38■■■□□ 2.13
USF3-203ENST00000491165 RIC3Q7Z5B4 369 aa28.38■■■□□ 2.13
USF3-203ENST00000491165 NUP98P52948 1817 aa28.38■■■□□ 2.13
USF3-203ENST00000491165 PLBD2Q8NHP8 589 aa28.37■■■□□ 2.13
USF3-203ENST00000491165 DDX58O95786 925 aaKnown RBP28.37■■■□□ 2.13
USF3-203ENST00000491165 DZIP3Q86Y13 1208 aaKnown RBP28.37■■■□□ 2.13
USF3-203ENST00000491165 ITPRIPQ8IWB1 547 aa28.37■■■□□ 2.13
USF3-203ENST00000491165 AK7Q96M32 723 aa28.37■■■□□ 2.13
USF3-203ENST00000491165 HLFQ16534 295 aa28.36■■■□□ 2.13
USF3-203ENST00000491165 INTS3Q68E01 1043 aaKnown RBP28.36■■■□□ 2.13
USF3-203ENST00000491165 UPF1Q92900 1129 aaKnown RBP eCLIP28.36■■■□□ 2.13
USF3-203ENST00000491165 PXDNLA1KZ92 1463 aa28.36■■■□□ 2.13
USF3-203ENST00000491165 PHF14O94880 888 aa28.36■■■□□ 2.13
USF3-203ENST00000491165 BECN1Q14457 450 aa28.36■■■□□ 2.13
USF3-203ENST00000491165 BCORQ6W2J9 1755 aa28.35■■■□□ 2.13
USF3-203ENST00000491165 BEND3Q5T5X7 828 aa28.35■■■□□ 2.13
USF3-203ENST00000491165 RTCBQ9Y3I0 505 aaKnown RBP28.35■■■□□ 2.13
USF3-203ENST00000491165 MAP3K15Q6ZN16 1313 aa28.35■■■□□ 2.13
USF3-203ENST00000491165 AKT1S1Q96B36 256 aa28.34■■■□□ 2.13
USF3-203ENST00000491165 ANO8Q9HCE9 1232 aaPredicted RBP28.34■■■□□ 2.13
USF3-203ENST00000491165 CWF19L2Q2TBE0 894 aaKnown RBP28.34■■■□□ 2.13
USF3-203ENST00000491165 UPF2Q9HAU5 1272 aaKnown RBP28.34■■■□□ 2.13
USF3-203ENST00000491165 AFDNP55196 1824 aaKnown RBP28.33■■■□□ 2.13
USF3-203ENST00000491165 IGKV5-2P06315 115 aa28.33■■■□□ 2.13
USF3-203ENST00000491165 CCDC125Q86Z20 511 aa28.33■■■□□ 2.13
USF3-203ENST00000491165 KIF6Q6ZMV9 814 aa28.33■■■□□ 2.13
USF3-203ENST00000491165 ARHGEF1Q92888 912 aaKnown RBP28.33■■■□□ 2.13
USF3-203ENST00000491165 METTL22Q9BUU2 404 aaPredicted RBP28.33■■■□□ 2.13
USF3-203ENST00000491165 CAMTA2O94983 1202 aa28.32■■■□□ 2.12
USF3-203ENST00000491165 MYD88Q99836 296 aa28.32■■■□□ 2.12
USF3-203ENST00000491165 ATP10DQ9P241 1426 aa28.32■■■□□ 2.12
USF3-203ENST00000491165 SCN7AQ01118 1682 aa28.32■■■□□ 2.12
USF3-203ENST00000491165 FRAT2O75474 233 aaPredicted RBP28.31■■■□□ 2.12
USF3-203ENST00000491165 ANKRD36CQ5JPF3 1778 aa28.31■■■□□ 2.12
USF3-203ENST00000491165 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.31■■■□□ 2.12
USF3-203ENST00000491165 ATP5J2-PTCD1G3V325 749 aa28.31■■■□□ 2.12
USF3-203ENST00000491165 SRP68Q9UHB9 627 aaKnown RBP28.3■■■□□ 2.12
USF3-203ENST00000491165 ZBTB7BO15156 539 aaPredicted RBP28.28■■■□□ 2.12
USF3-203ENST00000491165 CCT4P50991 539 aaKnown RBP28.28■■■□□ 2.12
USF3-203ENST00000491165 GIGYF2Q6Y7W6 1299 aaKnown RBP28.28■■■□□ 2.12
USF3-203ENST00000491165 SRCIN1Q9C0H9 1055 aa28.28■■■□□ 2.12
USF3-203ENST00000491165 BCL2L12Q9HB09 334 aa28.28■■■□□ 2.12
USF3-203ENST00000491165 TRAPPC3LQ5T215 181 aa28.27■■■□□ 2.12
USF3-203ENST00000491165 MEIS3Q99687 375 aa28.27■■■□□ 2.12
USF3-203ENST00000491165 TFCP2L1Q9NZI6 479 aa28.27■■■□□ 2.12
USF3-203ENST00000491165 ERVV-1B6SEH8 477 aa28.27■■■□□ 2.12
USF3-203ENST00000491165 LINS1Q8NG48 757 aa28.27■■■□□ 2.12
USF3-203ENST00000491165 TBC1D32Q96NH3 1257 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms