RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 NLRP5P59047 1200 aa20.39■□□□□ 0.85
NPHP4-209ENST00000489180 SNW1Q13573 536 aaKnown RBP20.39■□□□□ 0.85
NPHP4-209ENST00000489180 USP16Q9Y5T5 823 aa20.39■□□□□ 0.85
NPHP4-209ENST00000489180 UBE2HP62256 183 aa20.39■□□□□ 0.85
NPHP4-209ENST00000489180 TDRD12Q587J7 1177 aaKnown RBP20.39■□□□□ 0.85
NPHP4-209ENST00000489180 PRKCSHP14314 528 aaPredicted RBP20.38■□□□□ 0.85
NPHP4-209ENST00000489180 NUCB1Q02818 461 aa20.38■□□□□ 0.85
NPHP4-209ENST00000489180 ZSWIM4Q9H7M6 989 aa20.38■□□□□ 0.85
NPHP4-209ENST00000489180 YEATS4O95619 227 aa20.38■□□□□ 0.85
NPHP4-209ENST00000489180 DBF4Q9UBU7 674 aaPredicted RBP20.38■□□□□ 0.85
NPHP4-209ENST00000489180 CNPY2Q9Y2B0 182 aa20.38■□□□□ 0.85
NPHP4-209ENST00000489180 PCDHB15Q9Y5E8 787 aa20.38■□□□□ 0.85
NPHP4-209ENST00000489180 PPP1R12BO60237 982 aaPredicted RBP20.38■□□□□ 0.85
NPHP4-209ENST00000489180 MAP2K1Q02750 393 aaPredicted RBP20.37■□□□□ 0.85
NPHP4-209ENST00000489180 GSDMDP57764 484 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 CEP135Q66GS9 1140 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 ZBTB3Q9H5J0 574 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 SDSP20132 328 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 LRSAM1Q6UWE0 723 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 TRMT112Q9UI30 125 aaKnown RBP20.37■□□□□ 0.85
NPHP4-209ENST00000489180 ATP5J2-PTCD1G3V325 749 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 NEMFO60524 1076 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 PHAXQ9H814 394 aaKnown RBP20.37■□□□□ 0.85
NPHP4-209ENST00000489180 HYPKQ9NX55 129 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 NEK1Q96PY6 1258 aa20.37■□□□□ 0.85
NPHP4-209ENST00000489180 EZRP15311 586 aaKnown RBP20.36■□□□□ 0.85
NPHP4-209ENST00000489180 IFFO1Q0D2I5 559 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 DZIP1Q86YF9 867 aaKnown RBP20.36■□□□□ 0.85
NPHP4-209ENST00000489180 ANXA1P04083 346 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 GPTP24298 496 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 IQCA1Q86XH1 822 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 FAM135AQ9P2D6 1515 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 AMOTQ4VCS5 1084 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 MICU3Q86XE3 530 aa20.36■□□□□ 0.85
NPHP4-209ENST00000489180 CCDC194A0A1B0GVG4 234 aa20.35■□□□□ 0.85
NPHP4-209ENST00000489180 TCEANC2Q96MN5 208 aa20.35■□□□□ 0.85
NPHP4-209ENST00000489180 SLC4A8Q2Y0W8 1093 aa20.35■□□□□ 0.85
NPHP4-209ENST00000489180 ORC3Q9UBD5 711 aaPredicted RBP20.35■□□□□ 0.85
NPHP4-209ENST00000489180 MAGI1Q96QZ7 1491 aaPredicted RBP20.35■□□□□ 0.85
NPHP4-209ENST00000489180 ZSCAN22P10073 491 aaPredicted RBP20.35■□□□□ 0.85
NPHP4-209ENST00000489180 XRCC6P12956 609 aaKnown RBP eCLIP20.35■□□□□ 0.85
NPHP4-209ENST00000489180 SLC5A1P13866 664 aa20.35■□□□□ 0.85
NPHP4-209ENST00000489180 RNF187Q5TA31 235 aaPredicted RBP20.35■□□□□ 0.85
NPHP4-209ENST00000489180 ZFP91Q96JP5 570 aaPredicted RBP20.35■□□□□ 0.85
NPHP4-209ENST00000489180 PI4KAP2A4QPH2 592 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 USO1O60763 962 aaKnown RBP20.34■□□□□ 0.85
NPHP4-209ENST00000489180 MTIF2P46199 727 aaKnown RBP20.34■□□□□ 0.85
NPHP4-209ENST00000489180 PI4KAP1Q8N8J0 262 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 LRRC2Q9BYS8 371 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 ANKIB1Q9P2G1 1089 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 WASLO00401 505 aaPredicted RBP20.34■□□□□ 0.85
NPHP4-209ENST00000489180 MCM5P33992 734 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 IARSP41252 1262 aaKnown RBP20.34■□□□□ 0.85
NPHP4-209ENST00000489180 TMEM67Q5HYA8 995 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 CRACR2BQ8N4Y2 399 aaPredicted RBP20.34■□□□□ 0.85
NPHP4-209ENST00000489180 PAFAH1B1P43034 410 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 ZNF444Q8N0Y2 327 aaPredicted RBP20.34■□□□□ 0.85
NPHP4-209ENST00000489180 ZNF287Q9HBT7 754 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 CCDC96Q2M329 555 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 USP48Q86UV5 1035 aa20.34■□□□□ 0.85
NPHP4-209ENST00000489180 ANKRD18BA2A2Z9 1011 aa20.33■□□□□ 0.85
NPHP4-209ENST00000489180 LIG1P18858 919 aa20.33■□□□□ 0.85
NPHP4-209ENST00000489180 UVSSAQ2YD98 709 aa20.33■□□□□ 0.85
NPHP4-209ENST00000489180 MCM3P25205 808 aa20.33■□□□□ 0.85
NPHP4-209ENST00000489180 HSP90AA4PQ58FG1 418 aa20.33■□□□□ 0.85
NPHP4-209ENST00000489180 MEIS3Q99687 375 aa20.33■□□□□ 0.84
NPHP4-209ENST00000489180 CATIPQ7Z7H3 387 aa20.33■□□□□ 0.84
NPHP4-209ENST00000489180 MAP3K1Q13233 1512 aa20.33■□□□□ 0.84
NPHP4-209ENST00000489180 SCAF11Q99590 1463 aaKnown RBP20.32■□□□□ 0.84
NPHP4-209ENST00000489180 CTNNBL1Q8WYA6 563 aaPredicted RBP20.32■□□□□ 0.84
NPHP4-209ENST00000489180 SLC26A6Q9BXS9 759 aa20.32■□□□□ 0.84
NPHP4-209ENST00000489180 GOLGA6L10A0A0M3HER8 536 aa20.32■□□□□ 0.84
NPHP4-209ENST00000489180 HDAC1Q13547 482 aaPredicted RBP20.32■□□□□ 0.84
NPHP4-209ENST00000489180 ANO6Q4KMQ2 910 aa20.32■□□□□ 0.84
NPHP4-209ENST00000489180 METAP2P50579 478 aaKnown RBP eCLIP20.32■□□□□ 0.84
NPHP4-209ENST00000489180 GNG11P61952 73 aa20.32■□□□□ 0.84
NPHP4-209ENST00000489180 C16orf71Q8IYS4 520 aaPredicted RBP20.32■□□□□ 0.84
NPHP4-209ENST00000489180 GIMAP7Q8NHV1 300 aa20.32■□□□□ 0.84
NPHP4-209ENST00000489180 TMEM266Q2M3C6 531 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 VPS36Q86VN1 386 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 CCDC12Q8WUD4 166 aaPredicted RBP20.31■□□□□ 0.84
NPHP4-209ENST00000489180 NOS1P29475 1434 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 C8orf34Q49A92 452 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 FBXO31Q5XUX0 539 aaPredicted RBP20.31■□□□□ 0.84
NPHP4-209ENST00000489180 UBE3BQ7Z3V4 1068 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 BRF1Q92994 677 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 RPRD2Q5VT52 1461 aaKnown RBP20.31■□□□□ 0.84
NPHP4-209ENST00000489180 RNF41Q9H4P4 317 aaPredicted RBP20.31■□□□□ 0.84
NPHP4-209ENST00000489180 TNNQ9UQP3 1299 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 GSTTP1A0A1W2PQM5 241 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 POTEJP0CG39 1038 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 SMARCC1Q92922 1105 aaPredicted RBP20.31■□□□□ 0.84
NPHP4-209ENST00000489180 MACROD2A1Z1Q3 448 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 HLTFQ14527 1009 aaKnown RBP eCLIP20.31■□□□□ 0.84
NPHP4-209ENST00000489180 PODXL2Q9NZ53 605 aa20.31■□□□□ 0.84
NPHP4-209ENST00000489180 DYNC1I1O14576 645 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 LMAN1P49257 510 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 SPTY2D1Q68D10 685 aaPredicted RBP20.3■□□□□ 0.84
NPHP4-209ENST00000489180 DDX46Q7L014 1031 aaKnown RBP20.3■□□□□ 0.84
NPHP4-209ENST00000489180 RHPN1Q8TCX5 695 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms