RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 CCDC24Q8N4L8 307 aa11.86□□□□□ -0.51
HDAC6-232ENST00000489053 NECTIN2Q92692 538 aa11.86□□□□□ -0.51
HDAC6-232ENST00000489053 NYXQ9GZU5 481 aa11.86□□□□□ -0.51
HDAC6-232ENST00000489053 ATP10DQ9P241 1426 aa11.86□□□□□ -0.51
HDAC6-232ENST00000489053 ERVV-1B6SEH8 477 aa11.85□□□□□ -0.51
HDAC6-232ENST00000489053 GNAI1P63096 354 aa11.85□□□□□ -0.51
HDAC6-232ENST00000489053 CHMP4AQ9BY43 222 aa11.85□□□□□ -0.51
HDAC6-232ENST00000489053 ZBTB3Q9H5J0 574 aa11.85□□□□□ -0.51
HDAC6-232ENST00000489053 CHD4Q14839 1912 aa11.85□□□□□ -0.51
HDAC6-232ENST00000489053 MAP3K15Q6ZN16 1313 aa11.85□□□□□ -0.51
HDAC6-232ENST00000489053 CHL1O00533 1208 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 KCNA3P22001 575 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 HDGFL1Q5TGJ6 251 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 CNKSR1Q969H4 720 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 CFAP44Q96MT7 982 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 ZNF219Q9P2Y4 722 aaPredicted RBP11.84□□□□□ -0.51
HDAC6-232ENST00000489053 TRIM35Q9UPQ4 493 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 SCN7AQ01118 1682 aa11.84□□□□□ -0.51
HDAC6-232ENST00000489053 GPTP24298 496 aa11.83□□□□□ -0.52
HDAC6-232ENST00000489053 AIMP1Q12904 312 aaKnown RBP11.83□□□□□ -0.52
HDAC6-232ENST00000489053 C9orf131Q5VYM1 1079 aa11.83□□□□□ -0.52
HDAC6-232ENST00000489053 TTLL7Q6ZT98 887 aa11.83□□□□□ -0.52
HDAC6-232ENST00000489053 IFT57Q9NWB7 429 aa11.83□□□□□ -0.52
HDAC6-232ENST00000489053 RNF181Q9P0P0 153 aa11.83□□□□□ -0.52
HDAC6-232ENST00000489053 N4BP2Q86UW6 1770 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-232ENST00000489053 HOXB7P09629 217 aa11.82□□□□□ -0.52
HDAC6-232ENST00000489053 HLFQ16534 295 aa11.82□□□□□ -0.52
HDAC6-232ENST00000489053 HSP90AB3PQ58FF7 597 aa11.82□□□□□ -0.52
HDAC6-232ENST00000489053 SOGA3Q5TF21 947 aa11.82□□□□□ -0.52
HDAC6-232ENST00000489053 MASTLQ96GX5 879 aa11.82□□□□□ -0.52
HDAC6-232ENST00000489053 TMX4Q9H1E5 349 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-232ENST00000489053 DLG5Q8TDM6 1919 aa11.82□□□□□ -0.52
HDAC6-232ENST00000489053 KIF13BQ9NQT8 1826 aa11.81□□□□□ -0.52
HDAC6-232ENST00000489053 NPR1P16066 1061 aa11.81□□□□□ -0.52
HDAC6-232ENST00000489053 PARP10Q53GL7 1025 aa11.81□□□□□ -0.52
HDAC6-232ENST00000489053 STYK1Q6J9G0 422 aa11.81□□□□□ -0.52
HDAC6-232ENST00000489053 PPP1R42Q7Z4L9 355 aa11.81□□□□□ -0.52
HDAC6-232ENST00000489053 C16orf71Q8IYS4 520 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-232ENST00000489053 XAGE3Q8WTP9 111 aa11.81□□□□□ -0.52
HDAC6-232ENST00000489053 RPGRQ92834 1020 aaKnown RBP11.81□□□□□ -0.52
HDAC6-232ENST00000489053 DBF4Q9UBU7 674 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-232ENST00000489053 LAMB4A4D0S4 1761 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 KDM3BQ7LBC6 1761 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 C21orf2O43822 256 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 ANXA1P04083 346 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 LMNB1P20700 586 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 DUSP27Q5VZP5 1158 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 COPS6Q7L5N1 327 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 DDX21Q9NR30 783 aaKnown RBP eCLIP11.8□□□□□ -0.52
HDAC6-232ENST00000489053 MBIPQ9NS73 344 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 KDM2BQ8NHM5 1336 aa11.8□□□□□ -0.52
HDAC6-232ENST00000489053 SRGNP10124 158 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 ALDH1B1P30837 517 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 C1QTNF8P60827 252 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 RASSF7Q02833 373 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 GOLGA2Q08379 1002 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 PRPF40BQ6NWY9 871 aaKnown RBP11.79□□□□□ -0.52
HDAC6-232ENST00000489053 GIGYF2Q6Y7W6 1299 aaKnown RBP11.79□□□□□ -0.52
HDAC6-232ENST00000489053 FAM9BQ8IZU0 186 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
HDAC6-232ENST00000489053 HYPKQ9NX55 129 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 CHPF2Q9P2E5 772 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 ADCY9O60503 1353 aa11.79□□□□□ -0.52
HDAC6-232ENST00000489053 SENP3-EIF4A1A0A087X0R7 540 aa11.78□□□□□ -0.52
HDAC6-232ENST00000489053 ELL2O00472 640 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-232ENST00000489053 KRT24Q2M2I5 525 aa11.78□□□□□ -0.52
HDAC6-232ENST00000489053 PROSER3Q2NL68 480 aa11.78□□□□□ -0.52
HDAC6-232ENST00000489053 NUTM1Q86Y26 1132 aa11.78□□□□□ -0.52
HDAC6-232ENST00000489053 TAOK3Q9H2K8 898 aa11.78□□□□□ -0.52
HDAC6-232ENST00000489053 SALL2Q9Y467 1007 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-232ENST00000489053 DDX58O95786 925 aaKnown RBP11.77□□□□□ -0.53
HDAC6-232ENST00000489053 PDIA6Q15084 440 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 ERFEQ4G0M1 354 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 CCDC184Q52MB2 194 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 CCDC93Q567U6 631 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 RIC3Q7Z5B4 369 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 RBM17Q96I25 401 aaKnown RBP11.77□□□□□ -0.53
HDAC6-232ENST00000489053 STK31Q9BXU1 1019 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 TRMT112Q9UI30 125 aaKnown RBP11.77□□□□□ -0.53
HDAC6-232ENST00000489053 IBTKQ9P2D0 1353 aaPredicted RBP11.77□□□□□ -0.53
HDAC6-232ENST00000489053 NRXN2Q9P2S2 1712 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 BCORQ6W2J9 1755 aa11.77□□□□□ -0.53
HDAC6-232ENST00000489053 AFDNP55196 1824 aaKnown RBP11.76□□□□□ -0.53
HDAC6-232ENST00000489053 CCDC30Q5VVM6 783 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 SUSD4Q5VX71 490 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 ANKRD13DQ6ZTN6 518 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 ZNF34Q8IZ26 560 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 NLRP3Q96P20 1036 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 KIAA1551Q9HCM1 1747 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 RNF123Q5XPI4 1314 aa11.76□□□□□ -0.53
HDAC6-232ENST00000489053 ZC3H4Q9UPT8 1303 aaKnown RBP11.76□□□□□ -0.53
HDAC6-232ENST00000489053 CCDC27Q2M243 656 aa11.75□□□□□ -0.53
HDAC6-232ENST00000489053 DPY19L2Q6NUT2 758 aa11.75□□□□□ -0.53
HDAC6-232ENST00000489053 RTKN2Q8IZC4 609 aa11.75□□□□□ -0.53
HDAC6-232ENST00000489053 PLBD2Q8NHP8 589 aa11.75□□□□□ -0.53
HDAC6-232ENST00000489053 UBN2Q6ZU65 1347 aa11.75□□□□□ -0.53
HDAC6-232ENST00000489053 ZNF853P0CG23 659 aa11.74□□□□□ -0.53
HDAC6-232ENST00000489053 HSP90B1P14625 803 aaKnown RBP11.74□□□□□ -0.53
HDAC6-232ENST00000489053 TCIRG1Q13488 830 aa11.74□□□□□ -0.53
HDAC6-232ENST00000489053 WWC1Q8IX03 1113 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms