RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 CLCN1P35523 988 aa8.46□□□□□ -1.06
PTCD3-215ENST00000484203 PPP4CP60510 307 aa8.46□□□□□ -1.06
PTCD3-215ENST00000484203 GGNBP2Q9H3C7 697 aa8.46□□□□□ -1.06
PTCD3-215ENST00000484203 GPCPD1Q9NPB8 672 aa8.46□□□□□ -1.06
PTCD3-215ENST00000484203 TNS2Q63HR2 1409 aa8.46□□□□□ -1.06
PTCD3-215ENST00000484203 DDX11L8A8MPP1 907 aa8.45□□□□□ -1.06
PTCD3-215ENST00000484203 R3HDM1Q15032 1099 aaKnown RBP8.45□□□□□ -1.06
PTCD3-215ENST00000484203 RAPGEF4Q8WZA2 1011 aa8.45□□□□□ -1.06
PTCD3-215ENST00000484203 TSR3Q9UJK0 312 aaKnown RBP8.45□□□□□ -1.06
PTCD3-215ENST00000484203 FLT4P35916 1363 aa8.45□□□□□ -1.06
PTCD3-215ENST00000484203 SULF1Q8IWU6 871 aa8.44□□□□□ -1.06
PTCD3-215ENST00000484203 RDH13Q8NBN7 331 aa8.44□□□□□ -1.06
PTCD3-215ENST00000484203 LTV1Q96GA3 475 aaPredicted RBP8.44□□□□□ -1.06
PTCD3-215ENST00000484203 REPIN1Q9BWE0 567 aaKnown RBP8.44□□□□□ -1.06
PTCD3-215ENST00000484203 WBP1LQ9NX94 342 aa8.44□□□□□ -1.06
PTCD3-215ENST00000484203 INSRP06213 1382 aa8.44□□□□□ -1.06
PTCD3-215ENST00000484203 HSPA5P11021 654 aaKnown RBP8.43□□□□□ -1.06
PTCD3-215ENST00000484203 TATP17735 454 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-215ENST00000484203 RRS1Q15050 365 aaKnown RBP8.43□□□□□ -1.06
PTCD3-215ENST00000484203 IFFO2Q5TF58 517 aa8.43□□□□□ -1.06
PTCD3-215ENST00000484203 ZCRB1Q8TBF4 217 aaKnown RBP8.43□□□□□ -1.06
PTCD3-215ENST00000484203 NECTIN2Q92692 538 aa8.43□□□□□ -1.06
PTCD3-215ENST00000484203 CARD14Q9BXL6 1004 aa8.43□□□□□ -1.06
PTCD3-215ENST00000484203 NSD3Q9BZ95 1437 aa8.43□□□□□ -1.06
PTCD3-215ENST00000484203 MON2Q7Z3U7 1717 aa8.43□□□□□ -1.06
PTCD3-215ENST00000484203 AKAP12Q02952 1782 aa8.43□□□□□ -1.06
PTCD3-215ENST00000484203 TXNRD1Q16881 649 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 SLC27A3Q5K4L6 730 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 GIGYF2Q6Y7W6 1299 aaKnown RBP8.42□□□□□ -1.06
PTCD3-215ENST00000484203 PARP9Q8IXQ6 854 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 DDX54Q8TDD1 881 aaKnown RBP8.42□□□□□ -1.06
PTCD3-215ENST00000484203 POLR3GLQ9BT43 218 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 TMUB1Q9BVT8 246 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 SPON1Q9HCB6 807 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 STK32BQ9NY57 414 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 KNSTRNQ9Y448 316 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 NSD2O96028 1365 aa8.42□□□□□ -1.06
PTCD3-215ENST00000484203 RGPD1P0DJD0 1748 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 PARP4Q9UKK3 1724 aaKnown RBP8.41□□□□□ -1.06
PTCD3-215ENST00000484203 USP54Q70EL1 1684 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 PLEKHG2Q9H7P9 1386 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 WASHC2AQ641Q2 1341 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 SLC10A3P09131 477 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 SSTR3P32745 418 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-215ENST00000484203 NBPF6Q5VWK0 638 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 NBPF4Q96M43 638 aa8.41□□□□□ -1.06
PTCD3-215ENST00000484203 FAM217BQ9NTX9 383 aaPredicted RBP8.41□□□□□ -1.06
PTCD3-215ENST00000484203 BRWD3Q6RI45 1802 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 COL18A1P39060 1754 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 PCDH11XQ9BZA7 1347 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 PCDH11YQ9BZA8 1340 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 PPM1GO15355 546 aaPredicted RBP8.4□□□□□ -1.06
PTCD3-215ENST00000484203 HSP90AB2PQ58FF8 381 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 NYAP1Q6ZVC0 841 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 PANK3Q9H999 370 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 SPG7Q9UQ90 795 aa8.4□□□□□ -1.06
PTCD3-215ENST00000484203 KCNQ2O43526 872 aa8.39□□□□□ -1.07
PTCD3-215ENST00000484203 CFHP08603 1231 aa8.39□□□□□ -1.07
PTCD3-215ENST00000484203 SLC15A2Q16348 729 aa8.39□□□□□ -1.07
PTCD3-215ENST00000484203 ACSBG1Q96GR2 724 aa8.39□□□□□ -1.07
PTCD3-215ENST00000484203 PPP1R1BQ9UD71 204 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-215ENST00000484203 RGS20O76081 388 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 CD46P15529 392 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 FBLN1P23142 703 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 NEUROD2Q15784 382 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 KMT5BQ4FZB7 885 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 MORC1Q86VD1 984 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 SYTL4Q96C24 671 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-215ENST00000484203 GPBP1L1Q9HC44 474 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-215ENST00000484203 POLKQ9UBT6 870 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 EMILIN1Q9Y6C2 1016 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 LRRC37A3O60309 1634 aa8.38□□□□□ -1.07
PTCD3-215ENST00000484203 PTF1AQ7RTS3 328 aa8.37□□□□□ -1.07
PTCD3-215ENST00000484203 SLC16A10Q8TF71 515 aa8.37□□□□□ -1.07
PTCD3-215ENST00000484203 SMARCC1Q92922 1105 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-215ENST00000484203 PRR14Q9BWN1 585 aa8.37□□□□□ -1.07
PTCD3-215ENST00000484203 HSP90AB1P08238 724 aaKnown RBP8.36□□□□□ -1.07
PTCD3-215ENST00000484203 MS4A1P11836 297 aa8.36□□□□□ -1.07
PTCD3-215ENST00000484203 APLP1P51693 650 aa8.36□□□□□ -1.07
PTCD3-215ENST00000484203 MTFR1LQ9H019 292 aa8.36□□□□□ -1.07
PTCD3-215ENST00000484203 PEAK1Q9H792 1746 aa8.35□□□□□ -1.07
PTCD3-215ENST00000484203 GCGRP47871 477 aa8.35□□□□□ -1.07
PTCD3-215ENST00000484203 AMOTQ4VCS5 1084 aa8.35□□□□□ -1.07
PTCD3-215ENST00000484203 USHBP1Q8N6Y0 703 aa8.35□□□□□ -1.07
PTCD3-215ENST00000484203 FLAD1Q8NFF5 587 aa8.35□□□□□ -1.07
PTCD3-215ENST00000484203 KDM4CQ9H3R0 1056 aa8.35□□□□□ -1.07
PTCD3-215ENST00000484203 TNS1Q9HBL0 1735 aaKnown RBP8.34□□□□□ -1.07
PTCD3-215ENST00000484203 LRP5O75197 1615 aa8.34□□□□□ -1.07
PTCD3-215ENST00000484203 TNNT2P45379 298 aaPredicted RBP8.34□□□□□ -1.07
PTCD3-215ENST00000484203 BRPF1P55201 1214 aaPredicted RBP8.34□□□□□ -1.07
PTCD3-215ENST00000484203 EIF4A2Q14240 407 aaKnown RBP8.34□□□□□ -1.07
PTCD3-215ENST00000484203 PLEKHO1Q53GL0 409 aaPredicted RBP8.34□□□□□ -1.07
PTCD3-215ENST00000484203 IFNL2Q8IZJ0 200 aa8.34□□□□□ -1.07
PTCD3-215ENST00000484203 BEGAINQ9BUH8 593 aa8.34□□□□□ -1.07
PTCD3-215ENST00000484203 TFCP2L1Q9NZI6 479 aa8.34□□□□□ -1.07
PTCD3-215ENST00000484203 CCNL1Q9UK58 526 aaPredicted RBP8.34□□□□□ -1.07
PTCD3-215ENST00000484203 MEGF6O75095 1541 aa8.34□□□□□ -1.08
PTCD3-215ENST00000484203 KIF7Q2M1P5 1343 aa8.33□□□□□ -1.08
PTCD3-215ENST00000484203 CYP27B1O15528 508 aa8.33□□□□□ -1.08
PTCD3-215ENST00000484203 ACTN4O43707 911 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms