RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 WDR4P57081 412 aaKnown RBP8.72□□□□□ -1.01
UPF3A-205ENST00000479712 PIP4K2BP78356 416 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 NOM1Q5C9Z4 860 aaKnown RBP8.72□□□□□ -1.01
UPF3A-205ENST00000479712 C16orf46Q6P387 395 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 CYP4X1Q8N118 509 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 NBPF15Q8N660 670 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 KDF1Q8NAX2 398 aaPredicted RBP8.72□□□□□ -1.01
UPF3A-205ENST00000479712 ZFAND3Q9H8U3 227 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 HRH3Q9Y5N1 445 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 USP3Q9Y6I4 520 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 ADAMTS12P58397 1594 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 CUL7Q14999 1698 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 CFAP43Q8NDM7 1665 aa8.72□□□□□ -1.01
UPF3A-205ENST00000479712 ANKRD33BA6NCL7 494 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 MEN1O00255 615 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 ARHGAP4P98171 946 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 ECM1Q16610 540 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 AGBL1Q96MI9 1066 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 NLRP3Q96P20 1036 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 KLF16Q9BXK1 252 aaPredicted RBP8.71□□□□□ -1.02
UPF3A-205ENST00000479712 DCTN4Q9UJW0 460 aa8.71□□□□□ -1.02
UPF3A-205ENST00000479712 E9PSI1 815 aa8.7□□□□□ -1.02
UPF3A-205ENST00000479712 GDF9O60383 454 aa8.7□□□□□ -1.02
UPF3A-205ENST00000479712 FAM13AO94988 1023 aa8.7□□□□□ -1.02
UPF3A-205ENST00000479712 TIMP2P16035 220 aa8.7□□□□□ -1.02
UPF3A-205ENST00000479712 RELBQ01201 579 aa8.7□□□□□ -1.02
UPF3A-205ENST00000479712 SAP130Q9H0E3 1048 aa8.7□□□□□ -1.02
UPF3A-205ENST00000479712 IQSEC3Q9UPP2 1182 aaPredicted RBP8.7□□□□□ -1.02
UPF3A-205ENST00000479712 RBM47A0AV96 593 aaKnown RBP8.69□□□□□ -1.02
UPF3A-205ENST00000479712 TNFRSF10AO00220 468 aa8.69□□□□□ -1.02
UPF3A-205ENST00000479712 NPR3P17342 541 aa8.69□□□□□ -1.02
UPF3A-205ENST00000479712 MPSTP25325 297 aa8.69□□□□□ -1.02
UPF3A-205ENST00000479712 CENPCQ03188 943 aa8.69□□□□□ -1.02
UPF3A-205ENST00000479712 FHDC1Q9C0D6 1143 aaPredicted RBP8.69□□□□□ -1.02
UPF3A-205ENST00000479712 SERTM1A2A2V5 107 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 COX20Q5RI15 118 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 POTEAQ6S8J7 498 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 TRIM67Q6ZTA4 783 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 BCL2L13Q9BXK5 485 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 ZNF395Q9H8N7 513 aaPredicted RBP8.68□□□□□ -1.02
UPF3A-205ENST00000479712 QTRT2Q9H974 415 aaKnown RBP8.68□□□□□ -1.02
UPF3A-205ENST00000479712 TOR4AQ9NXH8 423 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 CABP1Q9NZU7 370 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 ZNF232Q9UNY5 417 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 TOP2AP11388 1531 aaKnown RBP8.68□□□□□ -1.02
UPF3A-205ENST00000479712 KIAA0586Q9BVV6 1533 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 ABCA5Q8WWZ7 1642 aa8.68□□□□□ -1.02
UPF3A-205ENST00000479712 TEAD4Q15561 434 aa8.67□□□□□ -1.02
UPF3A-205ENST00000479712 NPAS4Q8IUM7 802 aa8.67□□□□□ -1.02
UPF3A-205ENST00000479712 ZSCAN29Q8IWY8 852 aaPredicted RBP8.67□□□□□ -1.02
UPF3A-205ENST00000479712 ABCC2Q92887 1545 aa8.67□□□□□ -1.02
UPF3A-205ENST00000479712 NGLY1Q96IV0 654 aa8.67□□□□□ -1.02
UPF3A-205ENST00000479712 ASB16Q96NS5 453 aa8.67□□□□□ -1.02
UPF3A-205ENST00000479712 EML1O00423 815 aa8.66□□□□□ -1.02
UPF3A-205ENST00000479712 SMPD1P17405 629 aa8.66□□□□□ -1.02
UPF3A-205ENST00000479712 GTF2E1P29083 439 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-205ENST00000479712 NOS2P35228 1153 aa8.66□□□□□ -1.02
UPF3A-205ENST00000479712 HIRAP54198 1017 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-205ENST00000479712 MEIOBQ8N635 442 aa8.66□□□□□ -1.02
UPF3A-205ENST00000479712 ZDHHC1Q8WTX9 485 aa8.66□□□□□ -1.02
UPF3A-205ENST00000479712 ZSCAN10Q96SZ4 725 aaPredicted RBP8.66□□□□□ -1.02
UPF3A-205ENST00000479712 STIM2Q9P246 746 aa8.66□□□□□ -1.02
UPF3A-205ENST00000479712 TNFRSF10BO14763 440 aa8.65□□□□□ -1.02
UPF3A-205ENST00000479712 SH3PXD2AQ5TCZ1 1133 aa8.65□□□□□ -1.02
UPF3A-205ENST00000479712 TMEM214Q6NUQ4 689 aaKnown RBP8.65□□□□□ -1.02
UPF3A-205ENST00000479712 PPARGC1BQ86YN6 1023 aaKnown RBP8.65□□□□□ -1.02
UPF3A-205ENST00000479712 L3MBTL2Q969R5 705 aa8.65□□□□□ -1.02
UPF3A-205ENST00000479712 MYO19Q96H55 970 aa8.65□□□□□ -1.02
UPF3A-205ENST00000479712 PREX1Q8TCU6 1659 aa8.65□□□□□ -1.03
UPF3A-205ENST00000479712 UNCXA6NJT0 531 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 POTECB2RU33 542 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 NDUFB5O43674 189 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 EIF1AXP47813 144 aaKnown RBP8.64□□□□□ -1.03
UPF3A-205ENST00000479712 ZNF295-AS1Q8N0V1 137 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 GIPC2Q8TF65 315 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 NIFKQ9BYG3 293 aaKnown RBP8.64□□□□□ -1.03
UPF3A-205ENST00000479712 LRFN2Q9ULH4 789 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 PARP3Q9Y6F1 533 aa8.64□□□□□ -1.03
UPF3A-205ENST00000479712 ZNF16P17020 682 aaPredicted RBP8.63□□□□□ -1.03
UPF3A-205ENST00000479712 PRR20EP86478 221 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 PRR20CP86479 221 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 PRR20DP86480 221 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 PRR20BP86481 221 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 PRR20AP86496 221 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 AAMPQ13685 434 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 SLC27A3Q5K4L6 730 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 ALKBH2Q6NS38 261 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 ALDH16A1Q8IZ83 802 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 RGL4Q8IZJ4 473 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 ABTB2Q8N961 1025 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 RHBDD1Q8TEB9 315 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 HPS1Q92902 700 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 BRPF3Q9ULD4 1205 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 HCN4Q9Y3Q4 1203 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 RUSC2Q8N2Y8 1516 aa8.63□□□□□ -1.03
UPF3A-205ENST00000479712 ZNF335Q9H4Z2 1342 aaPredicted RBP8.62□□□□□ -1.03
UPF3A-205ENST00000479712 DGAT1O75907 488 aa8.62□□□□□ -1.03
UPF3A-205ENST00000479712 GPC1P35052 558 aa8.62□□□□□ -1.03
UPF3A-205ENST00000479712 RTN1Q16799 776 aa8.62□□□□□ -1.03
UPF3A-205ENST00000479712 GNASQ5JWF2 1037 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms