RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 SCN4AP35499 1836 aa21.74■■□□□ 1.07
DDX56-210ENST00000479440 SRGNP10124 158 aa21.74■■□□□ 1.07
DDX56-210ENST00000479440 GAS2L2Q8NHY3 880 aa21.74■■□□□ 1.07
DDX56-210ENST00000479440 L3MBTL3Q96JM7 780 aaPredicted RBP21.74■■□□□ 1.07
DDX56-210ENST00000479440 FMNL2Q96PY5 1086 aa21.74■■□□□ 1.07
DDX56-210ENST00000479440 PASKQ96RG2 1323 aa21.74■■□□□ 1.07
DDX56-210ENST00000479440 SIPA1L3O60292 1781 aaPredicted RBP21.74■■□□□ 1.07
DDX56-210ENST00000479440 CAMTA2O94983 1202 aa21.73■■□□□ 1.07
DDX56-210ENST00000479440 CCDC93Q567U6 631 aa21.73■■□□□ 1.07
DDX56-210ENST00000479440 SLX4Q8IY92 1834 aa21.72■■□□□ 1.07
DDX56-210ENST00000479440 GNAT3A8MTJ3 354 aa21.72■■□□□ 1.07
DDX56-210ENST00000479440 CTCFP49711 727 aaPredicted RBP21.72■■□□□ 1.07
DDX56-210ENST00000479440 TAF1DQ9H5J8 278 aaPredicted RBP21.72■■□□□ 1.07
DDX56-210ENST00000479440 TMEM88BA6NKF7 163 aa21.71■■□□□ 1.07
DDX56-210ENST00000479440 DZIP3Q86Y13 1208 aaKnown RBP21.71■■□□□ 1.07
DDX56-210ENST00000479440 ZNF652Q9Y2D9 606 aa21.69■■□□□ 1.06
DDX56-210ENST00000479440 COL3A1P02461 1466 aaPredicted RBP21.69■■□□□ 1.06
DDX56-210ENST00000479440 A1BGP04217 495 aa21.68■■□□□ 1.06
DDX56-210ENST00000479440 FKBP4Q02790 459 aaKnown RBP eCLIP21.68■■□□□ 1.06
DDX56-210ENST00000479440 EAPPQ56P03 285 aaPredicted RBP21.68■■□□□ 1.06
DDX56-210ENST00000479440 NBPF5PQ86XG9 351 aaPredicted RBP21.68■■□□□ 1.06
DDX56-210ENST00000479440 IL17REQ8NFR9 667 aa21.68■■□□□ 1.06
DDX56-210ENST00000479440 NPR1P16066 1061 aa21.67■■□□□ 1.06
DDX56-210ENST00000479440 VEGFBP49765 207 aa21.67■■□□□ 1.06
DDX56-210ENST00000479440 HACL1Q9UJ83 578 aa21.67■■□□□ 1.06
DDX56-210ENST00000479440 ADAMTSL1Q8N6G6 1762 aa21.66■■□□□ 1.06
DDX56-210ENST00000479440 CEMIPQ8WUJ3 1361 aa21.66■■□□□ 1.06
DDX56-210ENST00000479440 ZNF541Q9H0D2 1346 aa21.66■■□□□ 1.06
DDX56-210ENST00000479440 U2SURPO15042 1029 aaKnown RBP21.66■■□□□ 1.06
DDX56-210ENST00000479440 CLEC4GQ6UXB4 293 aa21.66■■□□□ 1.06
DDX56-210ENST00000479440 PNMA8AQ86V59 439 aaPredicted RBP21.65■■□□□ 1.06
DDX56-210ENST00000479440 C7orf43Q8WVR3 580 aa21.65■■□□□ 1.06
DDX56-210ENST00000479440 CLEC11AQ9Y240 323 aa21.65■■□□□ 1.06
DDX56-210ENST00000479440 BTBD11A6QL63 1104 aa21.64■■□□□ 1.05
DDX56-210ENST00000479440 ITGBL1O95965 494 aaPredicted RBP21.64■■□□□ 1.05
DDX56-210ENST00000479440 EPHX2P34913 555 aa21.64■■□□□ 1.05
DDX56-210ENST00000479440 CC2D1BQ5T0F9 858 aaKnown RBP21.64■■□□□ 1.05
DDX56-210ENST00000479440 RTKN2Q8IZC4 609 aa21.64■■□□□ 1.05
DDX56-210ENST00000479440 ZNF277Q9NRM2 450 aaPredicted RBP21.64■■□□□ 1.05
DDX56-210ENST00000479440 WBP1LQ9NX94 342 aa21.64■■□□□ 1.05
DDX56-210ENST00000479440 KIF7Q2M1P5 1343 aa21.63■■□□□ 1.05
DDX56-210ENST00000479440 PCGF6Q9BYE7 350 aa21.63■■□□□ 1.05
DDX56-210ENST00000479440 RNF123Q5XPI4 1314 aa21.61■■□□□ 1.05
DDX56-210ENST00000479440 RASSF10A6NK89 507 aa21.61■■□□□ 1.05
DDX56-210ENST00000479440 RGL2O15211 777 aa21.61■■□□□ 1.05
DDX56-210ENST00000479440 LBX1P52954 281 aa21.61■■□□□ 1.05
DDX56-210ENST00000479440 TPTE2Q6XPS3 522 aa21.61■■□□□ 1.05
DDX56-210ENST00000479440 KLRG2A4D1S0 409 aaPredicted RBP21.6■■□□□ 1.05
DDX56-210ENST00000479440 IARSP41252 1262 aaKnown RBP21.6■■□□□ 1.05
DDX56-210ENST00000479440 MAP2K1Q02750 393 aaPredicted RBP21.6■■□□□ 1.05
DDX56-210ENST00000479440 DEFB115Q30KQ5 88 aa21.6■■□□□ 1.05
DDX56-210ENST00000479440 PIP4K2AP48426 406 aaPredicted RBP21.59■■□□□ 1.05
DDX56-210ENST00000479440 GPC2Q8N158 579 aa21.59■■□□□ 1.05
DDX56-210ENST00000479440 NIP7Q9Y221 180 aaKnown RBP eCLIP21.59■■□□□ 1.05
DDX56-210ENST00000479440 USP16Q9Y5T5 823 aa21.59■■□□□ 1.05
DDX56-210ENST00000479440 NPC1L1Q9UHC9 1359 aa21.59■■□□□ 1.05
DDX56-210ENST00000479440 FZD9O00144 591 aa21.58■■□□□ 1.05
DDX56-210ENST00000479440 PER1O15534 1290 aaPredicted RBP21.58■■□□□ 1.05
DDX56-210ENST00000479440 KCNQ3O43525 872 aa21.58■■□□□ 1.05
DDX56-210ENST00000479440 HSPA8P11142 646 aaKnown RBP21.58■■□□□ 1.05
DDX56-210ENST00000479440 ALDH1B1P30837 517 aa21.58■■□□□ 1.05
DDX56-210ENST00000479440 CNTROBQ8N137 903 aa21.58■■□□□ 1.05
DDX56-210ENST00000479440 ABT1Q9ULW3 272 aaKnown RBP21.58■■□□□ 1.05
DDX56-210ENST00000479440 THSD7BQ9C0I4 1608 aa21.58■■□□□ 1.04
DDX56-210ENST00000479440 SNRPA1P09661 255 aaKnown RBP21.57■■□□□ 1.04
DDX56-210ENST00000479440 MAP1SQ66K74 1059 aaPredicted RBP21.57■■□□□ 1.04
DDX56-210ENST00000479440 WDR33Q9C0J8 1336 aaKnown RBP21.56■■□□□ 1.04
DDX56-210ENST00000479440 JDP2Q8WYK2 163 aa21.56■■□□□ 1.04
DDX56-210ENST00000479440 GTF2E1P29083 439 aaPredicted RBP21.55■■□□□ 1.04
DDX56-210ENST00000479440 PRKAR2BP31323 418 aa21.55■■□□□ 1.04
DDX56-210ENST00000479440 OLFM4Q6UX06 510 aa21.55■■□□□ 1.04
DDX56-210ENST00000479440 SYNE4Q8N205 404 aa21.55■■□□□ 1.04
DDX56-210ENST00000479440 RTF1Q92541 710 aaKnown RBP21.55■■□□□ 1.04
DDX56-210ENST00000479440 ABHD8Q96I13 439 aa21.55■■□□□ 1.04
DDX56-210ENST00000479440 PSMD1Q99460 953 aa21.55■■□□□ 1.04
DDX56-210ENST00000479440 PRAMEF22A3QJZ6 481 aa21.54■■□□□ 1.04
DDX56-210ENST00000479440 LMOD1P29536 600 aaPredicted RBP21.54■■□□□ 1.04
DDX56-210ENST00000479440 EIF6P56537 245 aaKnown RBP21.54■■□□□ 1.04
DDX56-210ENST00000479440 SNED1Q8TER0 1413 aa21.54■■□□□ 1.04
DDX56-210ENST00000479440 FAM177BA6PVY3 158 aa21.53■■□□□ 1.04
DDX56-210ENST00000479440 CFAP53Q96M91 514 aa21.53■■□□□ 1.04
DDX56-210ENST00000479440 RSPH6AQ9H0K4 717 aa21.53■■□□□ 1.04
DDX56-210ENST00000479440 DDX21Q9NR30 783 aaKnown RBP eCLIP21.53■■□□□ 1.04
DDX56-210ENST00000479440 LAMB4A4D0S4 1761 aa21.53■■□□□ 1.04
DDX56-210ENST00000479440 SLC34A2O95436 690 aa21.52■■□□□ 1.04
DDX56-210ENST00000479440 CC2D2BQ6DHV5 1058 aa21.52■■□□□ 1.04
DDX56-210ENST00000479440 BEGAINQ9BUH8 593 aa21.52■■□□□ 1.04
DDX56-210ENST00000479440 NYXQ9GZU5 481 aa21.52■■□□□ 1.04
DDX56-210ENST00000479440 ECE1P42892 770 aa21.51■■□□□ 1.03
DDX56-210ENST00000479440 FAM161AQ3B820 660 aa21.51■■□□□ 1.03
DDX56-210ENST00000479440 PHACTR3Q96KR7 559 aa21.51■■□□□ 1.03
DDX56-210ENST00000479440 GJA3Q9Y6H8 435 aa21.51■■□□□ 1.03
DDX56-210ENST00000479440 ABCC12Q96J65 1359 aa21.5■■□□□ 1.03
DDX56-210ENST00000479440 RIC1Q4ADV7 1423 aa21.5■■□□□ 1.03
DDX56-210ENST00000479440 CRY2Q49AN0 593 aa21.5■■□□□ 1.03
DDX56-210ENST00000479440 PAXIP1Q6ZW49 1069 aaPredicted RBP21.5■■□□□ 1.03
DDX56-210ENST00000479440 NBPF26B4DH59 902 aa21.49■■□□□ 1.03
DDX56-210ENST00000479440 CNGB1Q14028 1251 aaPredicted RBP21.49■■□□□ 1.03
DDX56-210ENST00000479440 GRIPAP1Q4V328 841 aa21.49■■□□□ 1.03
DDX56-210ENST00000479440 NBPF10Q6P3W6 841 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms