RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 FZD9O00144 591 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 RTKN2Q8IZC4 609 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 SLC17A8Q8NDX2 589 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 JDP2Q8WYK2 163 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 MASTLQ96GX5 879 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 HPS5Q9UPZ3 1129 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 CACNA1SQ13698 1873 aa11.31□□□□□ -0.6
USP54-211ENST00000474929 NPHP1O15259 732 aa11.3□□□□□ -0.6
USP54-211ENST00000474929 SLC24A1O60721 1099 aa11.3□□□□□ -0.6
USP54-211ENST00000474929 PTCD1O75127 700 aaKnown RBP11.3□□□□□ -0.6
USP54-211ENST00000474929 CELF2O95319 508 aaKnown RBP11.3□□□□□ -0.6
USP54-211ENST00000474929 EIF6P56537 245 aaKnown RBP11.3□□□□□ -0.6
USP54-211ENST00000474929 REM2Q8IYK8 340 aaPredicted RBP11.3□□□□□ -0.6
USP54-211ENST00000474929 ST5P78524 1137 aa11.29□□□□□ -0.6
USP54-211ENST00000474929 INTS5Q6P9B9 1019 aaKnown RBP11.29□□□□□ -0.6
USP54-211ENST00000474929 SLX4Q8IY92 1834 aa11.29□□□□□ -0.6
USP54-211ENST00000474929 KIF20BQ96Q89 1820 aa11.29□□□□□ -0.6
USP54-211ENST00000474929 SCN7AQ01118 1682 aa11.29□□□□□ -0.6
USP54-211ENST00000474929 A0A087WZG4 1122 aa11.28□□□□□ -0.6
USP54-211ENST00000474929 FBLN1P23142 703 aa11.28□□□□□ -0.6
USP54-211ENST00000474929 IARSP41252 1262 aaKnown RBP11.28□□□□□ -0.6
USP54-211ENST00000474929 AKAP11Q9UKA4 1901 aa11.28□□□□□ -0.6
USP54-211ENST00000474929 PITPNM2Q9BZ72 1349 aa11.28□□□□□ -0.6
USP54-211ENST00000474929 TRAF5O00463 557 aa11.27□□□□□ -0.61
USP54-211ENST00000474929 SRGNP10124 158 aa11.27□□□□□ -0.61
USP54-211ENST00000474929 CNBD1Q8NA66 436 aa11.27□□□□□ -0.61
USP54-211ENST00000474929 CCDC102AQ96A19 550 aa11.27□□□□□ -0.61
USP54-211ENST00000474929 ZNF277Q9NRM2 450 aaPredicted RBP11.27□□□□□ -0.61
USP54-211ENST00000474929 MNX1P50219 401 aaPredicted RBP11.26□□□□□ -0.61
USP54-211ENST00000474929 PRR5LQ6MZQ0 368 aa11.26□□□□□ -0.61
USP54-211ENST00000474929 ADARB2Q9NS39 739 aaKnown RBP11.26□□□□□ -0.61
USP54-211ENST00000474929 AMOTQ4VCS5 1084 aa11.25□□□□□ -0.61
USP54-211ENST00000474929 BCL2L12Q9HB09 334 aa11.25□□□□□ -0.61
USP54-211ENST00000474929 HDAC9Q9UKV0 1011 aa11.25□□□□□ -0.61
USP54-211ENST00000474929 CDHR2Q9BYE9 1310 aa11.25□□□□□ -0.61
USP54-211ENST00000474929 FYB1O15117 783 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 SCNN1DP51172 638 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 HUNKP57058 714 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 GRIPAP1Q4V328 841 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 PLEKHO1Q53GL0 409 aaPredicted RBP11.24□□□□□ -0.61
USP54-211ENST00000474929 C1orf141Q5JVX7 400 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 FBXO46Q6PJ61 603 aaPredicted RBP11.24□□□□□ -0.61
USP54-211ENST00000474929 ZC3H15Q8WU90 426 aaKnown RBP11.24□□□□□ -0.61
USP54-211ENST00000474929 C7orf43Q8WVR3 580 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 PSMD1Q99460 953 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 EYA1Q99502 592 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 GGNBP2Q9H3C7 697 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 GJA3Q9Y6H8 435 aa11.24□□□□□ -0.61
USP54-211ENST00000474929 TRPA1O75762 1119 aa11.23□□□□□ -0.61
USP54-211ENST00000474929 CYP19A1P11511 503 aaPredicted RBP11.23□□□□□ -0.61
USP54-211ENST00000474929 NPR1P16066 1061 aa11.23□□□□□ -0.61
USP54-211ENST00000474929 FMR1Q06787 632 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP54-211ENST00000474929 INTS3Q68E01 1043 aaKnown RBP11.23□□□□□ -0.61
USP54-211ENST00000474929 RGMBQ6NW40 437 aa11.23□□□□□ -0.61
USP54-211ENST00000474929 CDC37L1Q7L3B6 337 aa11.23□□□□□ -0.61
USP54-211ENST00000474929 ZNF408Q9H9D4 720 aa11.23□□□□□ -0.61
USP54-211ENST00000474929 RNF186Q9NXI6 227 aa11.23□□□□□ -0.61
USP54-211ENST00000474929 ST20-MTHFSA0A0A6YYL1 179 aa11.22□□□□□ -0.61
USP54-211ENST00000474929 MTHFSP49914 203 aa11.22□□□□□ -0.61
USP54-211ENST00000474929 CC2D2BQ6DHV5 1058 aa11.22□□□□□ -0.61
USP54-211ENST00000474929 ZNF530Q6P9A1 599 aaPredicted RBP11.22□□□□□ -0.61
USP54-211ENST00000474929 RBBP6Q7Z6E9 1792 aaKnown RBP11.22□□□□□ -0.61
USP54-211ENST00000474929 DNAJC10Q8IXB1 793 aa11.22□□□□□ -0.61
USP54-211ENST00000474929 ZBTB1Q9Y2K1 713 aa11.22□□□□□ -0.61
USP54-211ENST00000474929 SCN11AQ9UI33 1791 aa11.21□□□□□ -0.61
USP54-211ENST00000474929 EPS15P42566 896 aa11.21□□□□□ -0.61
USP54-211ENST00000474929 NOM1Q5C9Z4 860 aaKnown RBP11.21□□□□□ -0.61
USP54-211ENST00000474929 NPM2Q86SE8 214 aaKnown RBP11.21□□□□□ -0.61
USP54-211ENST00000474929 VSIG10Q8N0Z9 540 aa11.21□□□□□ -0.61
USP54-211ENST00000474929 SETDB2Q96T68 719 aa11.21□□□□□ -0.61
USP54-211ENST00000474929 ALDH1B1P30837 517 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 KIF23Q02241 960 aaPredicted RBP11.2□□□□□ -0.62
USP54-211ENST00000474929 TBC1D9BQ66K14 1250 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 SYNE4Q8N205 404 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 CARD11Q9BXL7 1154 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 PGAP2Q9UHJ9 254 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 EMILIN1Q9Y6C2 1016 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 TRIOBPQ9H2D6 2365 aa11.2□□□□□ -0.62
USP54-211ENST00000474929 PPM1GO15355 546 aaPredicted RBP11.19□□□□□ -0.62
USP54-211ENST00000474929 C2orf69Q8N8R5 385 aa11.19□□□□□ -0.62
USP54-211ENST00000474929 NFATC2IPQ8NCF5 419 aa11.19□□□□□ -0.62
USP54-211ENST00000474929 L3MBTL2Q969R5 705 aa11.19□□□□□ -0.62
USP54-211ENST00000474929 GLIS2Q9BZE0 524 aaPredicted RBP11.19□□□□□ -0.62
USP54-211ENST00000474929 GPRC5DQ9NZD1 345 aa11.19□□□□□ -0.62
USP54-211ENST00000474929 MRC1P22897 1456 aa11.19□□□□□ -0.62
USP54-211ENST00000474929 FAM155AB1AL88 458 aaPredicted RBP11.18□□□□□ -0.62
USP54-211ENST00000474929 STARD3NLO95772 234 aa11.18□□□□□ -0.62
USP54-211ENST00000474929 ZNF157P51786 506 aaPredicted RBP11.18□□□□□ -0.62
USP54-211ENST00000474929 LARGE2Q8N3Y3 721 aa11.18□□□□□ -0.62
USP54-211ENST00000474929 COLQQ9Y215 455 aaPredicted RBP11.18□□□□□ -0.62
USP54-211ENST00000474929 SLC10A3P09131 477 aa11.17□□□□□ -0.62
USP54-211ENST00000474929 EIF5P55010 431 aaKnown RBP11.17□□□□□ -0.62
USP54-211ENST00000474929 NIM1KQ8IY84 436 aa11.17□□□□□ -0.62
USP54-211ENST00000474929 ZIC5Q96T25 663 aa11.17□□□□□ -0.62
USP54-211ENST00000474929 VPS33BQ9H267 617 aa11.16□□□□□ -0.62
USP54-211ENST00000474929 GBA2Q9HCG7 927 aaPredicted RBP11.16□□□□□ -0.62
USP54-211ENST00000474929 SNED1Q8TER0 1413 aa11.16□□□□□ -0.62
USP54-211ENST00000474929 KLRG2A4D1S0 409 aaPredicted RBP11.15□□□□□ -0.62
USP54-211ENST00000474929 CANXP27824 592 aaKnown RBP11.15□□□□□ -0.62
USP54-211ENST00000474929 NBPF5PQ86XG9 351 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms