RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TAF3Q5VWG9 929 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 USP44Q9H0E7 712 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 PAXBP1Q9Y5B6 917 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 CRYBG1Q9Y4K1 1723 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 SRGAP3O43295 1099 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 FIBPO43427 364 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 IFIT2P09913 472 aaKnown RBP7.28□□□□□ -1.24
HERC4-209ENST00000473533 CASTP20810 708 aaKnown RBP7.28□□□□□ -1.24
HERC4-209ENST00000473533 KCNJ4P48050 445 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 MTX1Q13505 466 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 NPHP3Q7Z494 1330 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 PPP1R42Q7Z4L9 355 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 PI4K2BQ8TCG2 481 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 ZSWIM6Q9HCJ5 1215 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 ECHDC1Q9NTX5 307 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 EID1Q9Y6B2 187 aa7.28□□□□□ -1.24
HERC4-209ENST00000473533 USP54Q70EL1 1684 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 KIF20AO95235 890 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 GJB2P29033 226 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 AEBP2Q6ZN18 517 aaPredicted RBP7.27□□□□□ -1.25
HERC4-209ENST00000473533 NGDNQ8NEJ9 315 aaKnown RBP7.27□□□□□ -1.25
HERC4-209ENST00000473533 KIAA1524Q8TCG1 905 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 KIF2AO00139 706 aaPredicted RBP7.27□□□□□ -1.25
HERC4-209ENST00000473533 CTAGE5O15320 804 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 RUFY3Q7L099 469 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 TICAM2Q86XR7 235 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 DNAAF4Q8WXU2 420 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 FUCA2Q9BTY2 467 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 ROBO2Q9HCK4 1378 aa7.27□□□□□ -1.25
HERC4-209ENST00000473533 JAKMIP1Q96N16 626 aaKnown RBP7.26□□□□□ -1.25
HERC4-209ENST00000473533 EYA1Q99502 592 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 HYPKQ9NX55 129 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 NRDCO43847 1150 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 CDC25BP30305 580 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 PLCB2Q00722 1185 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 LARP1BQ659C4 914 aaKnown RBP7.26□□□□□ -1.25
HERC4-209ENST00000473533 TNMDQ9H2S6 317 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 MTMR6Q9Y217 621 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 DIP2BQ9P265 1576 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 NCAPD2Q15021 1401 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 VPS37CA5D8V6 355 aaPredicted RBP7.26□□□□□ -1.25
HERC4-209ENST00000473533 SMTNL1A8MU46 457 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 FAM193AP78312 1265 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 DMTNQ08495 405 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 ATL3Q6DD88 541 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 NUTM1Q86Y26 1132 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 GDPD2Q9HCC8 539 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 IL1RAPL2Q9NP60 686 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 CGNQ9P2M7 1197 aaKnown RBP7.26□□□□□ -1.25
HERC4-209ENST00000473533 UBR1Q8IWV7 1749 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 OVOS2A0A0G2JMS6 1433 aa7.26□□□□□ -1.25
HERC4-209ENST00000473533 DDX58O95786 925 aaKnown RBP7.25□□□□□ -1.25
HERC4-209ENST00000473533 TUBB4AP04350 444 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 DRC7Q8IY82 874 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 ZSCAN16Q9H4T2 348 aaPredicted RBP7.25□□□□□ -1.25
HERC4-209ENST00000473533 CFAP45Q9UL16 551 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 RFX7Q2KHR2 1363 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 SLIT1O75093 1534 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 GIGYF1O75420 1035 aaPredicted RBP7.25□□□□□ -1.25
HERC4-209ENST00000473533 TSHZ3Q63HK5 1081 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 BLOC1S2Q6QNY1 142 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 CWC27Q6UX04 472 aaKnown RBP7.25□□□□□ -1.25
HERC4-209ENST00000473533 CCDC83Q8IWF9 413 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 MIS18AQ9NYP9 233 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 ADAMTS13Q76LX8 1427 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.25□□□□□ -1.25
HERC4-209ENST00000473533 CREBRFQ8IUR6 639 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 TTC12Q9H892 705 aaPredicted RBP7.25□□□□□ -1.25
HERC4-209ENST00000473533 SNRKQ9NRH2 765 aa7.25□□□□□ -1.25
HERC4-209ENST00000473533 GOLGA6L19H0YKK7 550 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 TYRO3Q06418 890 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 UNC5CLQ8IV45 518 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 SPATA32Q96LK8 384 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 DBF4Q9UBU7 674 aaPredicted RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 CTIFO43310 598 aaKnown RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 DNM1Q05193 864 aaKnown RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 FAM69CQ0P6D2 419 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 G3BP1Q13283 466 aaKnown RBP eCLIP7.24□□□□□ -1.25
HERC4-209ENST00000473533 GIMAP6Q6P9H5 292 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 CLSTN2Q9H4D0 955 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 C9orf78Q9NZ63 289 aaPredicted RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 CEP170BQ9Y4F5 1589 aaPredicted RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 FOXO3O43524 673 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 FOXD4L6Q3SYB3 417 aaPredicted RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 AMOTQ4VCS5 1084 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 PRPF40BQ6NWY9 871 aaKnown RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 FOXD4L3Q6VB84 417 aaPredicted RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 TDRD7Q8NHU6 1098 aaKnown RBP7.24□□□□□ -1.25
HERC4-209ENST00000473533 TBX22Q9Y458 520 aa7.24□□□□□ -1.25
HERC4-209ENST00000473533 HMGB1P09429 215 aaKnown RBP7.23□□□□□ -1.25
HERC4-209ENST00000473533 HOXC9P31274 260 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 TEFQ10587 303 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 NECTIN1Q15223 517 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 TSGA10IPQ3SY00 556 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 BEND3Q5T5X7 828 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 RBM43Q6ZSC3 357 aaKnown RBP7.23□□□□□ -1.25
HERC4-209ENST00000473533 ANKRD7Q92527 254 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 TRIM5Q9C035 493 aa7.23□□□□□ -1.25
HERC4-209ENST00000473533 NAT10Q9H0A0 1025 aaKnown RBP7.23□□□□□ -1.25
HERC4-209ENST00000473533 OGFRQ9NZT2 677 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms