RNA–Protein interactions for RNA: ENST00000473345.5

MCF2L-223, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 399 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-223ENST00000473345 SNED1Q8TER0 1413 aa13.04□□□□□ -0.32
MCF2L-223ENST00000473345 CACNA1SQ13698 1873 aa13.04□□□□□ -0.32
MCF2L-223ENST00000473345 COL4A5P29400 1685 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 GNAT3A8MTJ3 354 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 U2SURPO15042 1029 aaKnown RBP13.03□□□□□ -0.32
MCF2L-223ENST00000473345 FOXN1O15353 648 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 PDE6BP35913 854 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 CHADLQ6NUI6 762 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 RSPH6AQ9H0K4 717 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 TAOK3Q9H2K8 898 aa13.03□□□□□ -0.32
MCF2L-223ENST00000473345 ARFGEF2Q9Y6D5 1785 aa13.02□□□□□ -0.32
MCF2L-223ENST00000473345 A0A087WZG4 1122 aa13.02□□□□□ -0.33
MCF2L-223ENST00000473345 ITGBL1O95965 494 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-223ENST00000473345 STYK1Q6J9G0 422 aa13.02□□□□□ -0.33
MCF2L-223ENST00000473345 DZIP3Q86Y13 1208 aaKnown RBP13.02□□□□□ -0.33
MCF2L-223ENST00000473345 CNBD1Q8NA66 436 aa13.02□□□□□ -0.33
MCF2L-223ENST00000473345 CREBZFQ9NS37 354 aa13.02□□□□□ -0.33
MCF2L-223ENST00000473345 ADAMTSL1Q8N6G6 1762 aa13.02□□□□□ -0.33
MCF2L-223ENST00000473345 TEFQ10587 303 aa13.01□□□□□ -0.33
MCF2L-223ENST00000473345 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
MCF2L-223ENST00000473345 DPY19L2Q6NUT2 758 aa13.01□□□□□ -0.33
MCF2L-223ENST00000473345 FMNL2Q96PY5 1086 aa13.01□□□□□ -0.33
MCF2L-223ENST00000473345 SETDB2Q96T68 719 aa13.01□□□□□ -0.33
MCF2L-223ENST00000473345 TAF1DQ9H5J8 278 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-223ENST00000473345 CNTNAP1P78357 1384 aa13□□□□□ -0.33
MCF2L-223ENST00000473345 KLRG2A4D1S0 409 aaPredicted RBP13□□□□□ -0.33
MCF2L-223ENST00000473345 PRKAR2BP31323 418 aa13□□□□□ -0.33
MCF2L-223ENST00000473345 HLFQ16534 295 aa13□□□□□ -0.33
MCF2L-223ENST00000473345 MCM10Q7L590 875 aa13□□□□□ -0.33
MCF2L-223ENST00000473345 MASTLQ96GX5 879 aa13□□□□□ -0.33
MCF2L-223ENST00000473345 L3MBTL3Q96JM7 780 aaPredicted RBP13□□□□□ -0.33
MCF2L-223ENST00000473345 ZNF277Q9NRM2 450 aaPredicted RBP13□□□□□ -0.33
MCF2L-223ENST00000473345 BTBD11A6QL63 1104 aa12.99□□□□□ -0.33
MCF2L-223ENST00000473345 VEGFBP49765 207 aa12.99□□□□□ -0.33
MCF2L-223ENST00000473345 FMR1Q06787 632 aaKnown RBP eCLIP12.99□□□□□ -0.33
MCF2L-223ENST00000473345 GAS2L2Q8NHY3 880 aa12.99□□□□□ -0.33
MCF2L-223ENST00000473345 CNKSR1Q969H4 720 aa12.99□□□□□ -0.33
MCF2L-223ENST00000473345 LTBP1Q14766 1721 aa12.99□□□□□ -0.33
MCF2L-223ENST00000473345 ABCC12Q96J65 1359 aa12.98□□□□□ -0.33
MCF2L-223ENST00000473345 NPC1L1Q9UHC9 1359 aa12.98□□□□□ -0.33
MCF2L-223ENST00000473345 TEX13AQ9BXU3 409 aaPredicted RBP12.98□□□□□ -0.33
MCF2L-223ENST00000473345 FAM177BA6PVY3 158 aa12.97□□□□□ -0.33
MCF2L-223ENST00000473345 NBPF5PQ86XG9 351 aaPredicted RBP12.97□□□□□ -0.33
MCF2L-223ENST00000473345 MIS18AQ9NYP9 233 aa12.97□□□□□ -0.33
MCF2L-223ENST00000473345 PDZRN3Q9UPQ7 1066 aa12.97□□□□□ -0.33
MCF2L-223ENST00000473345 RNF123Q5XPI4 1314 aa12.96□□□□□ -0.33
MCF2L-223ENST00000473345 ST5P78524 1137 aa12.96□□□□□ -0.33
MCF2L-223ENST00000473345 FKBP4Q02790 459 aaKnown RBP eCLIP12.96□□□□□ -0.33
MCF2L-223ENST00000473345 LDHDQ86WU2 507 aa12.96□□□□□ -0.33
MCF2L-223ENST00000473345 FZD9O00144 591 aa12.95□□□□□ -0.34
MCF2L-223ENST00000473345 NPR1P16066 1061 aa12.95□□□□□ -0.34
MCF2L-223ENST00000473345 CCDC93Q567U6 631 aa12.95□□□□□ -0.34
MCF2L-223ENST00000473345 MAP1SQ66K74 1059 aaPredicted RBP12.95□□□□□ -0.34
MCF2L-223ENST00000473345 C3orf67Q6ZVT6 689 aa12.95□□□□□ -0.34
MCF2L-223ENST00000473345 CCER1Q8TC90 406 aaPredicted RBP12.95□□□□□ -0.34
MCF2L-223ENST00000473345 EAPPQ56P03 285 aaPredicted RBP12.94□□□□□ -0.34
MCF2L-223ENST00000473345 CLEC4GQ6UXB4 293 aa12.94□□□□□ -0.34
MCF2L-223ENST00000473345 NUTM1Q86Y26 1132 aa12.94□□□□□ -0.34
MCF2L-223ENST00000473345 SYNE4Q8N205 404 aa12.94□□□□□ -0.34
MCF2L-223ENST00000473345 WBP1LQ9NX94 342 aa12.94□□□□□ -0.34
MCF2L-223ENST00000473345 NIP7Q9Y221 180 aaKnown RBP eCLIP12.94□□□□□ -0.34
MCF2L-223ENST00000473345 SCN4AP35499 1836 aa12.94□□□□□ -0.34
MCF2L-223ENST00000473345 UBN2Q6ZU65 1347 aa12.93□□□□□ -0.34
MCF2L-223ENST00000473345 SNRPA1P09661 255 aaKnown RBP12.93□□□□□ -0.34
MCF2L-223ENST00000473345 EPHX2P34913 555 aa12.93□□□□□ -0.34
MCF2L-223ENST00000473345 TMEM88BA6NKF7 163 aa12.92□□□□□ -0.34
MCF2L-223ENST00000473345 NPHP1O15259 732 aa12.92□□□□□ -0.34
MCF2L-223ENST00000473345 IARSP41252 1262 aaKnown RBP12.92□□□□□ -0.34
MCF2L-223ENST00000473345 LBX1P52954 281 aa12.92□□□□□ -0.34
MCF2L-223ENST00000473345 CRY2Q49AN0 593 aa12.92□□□□□ -0.34
MCF2L-223ENST00000473345 TTLL7Q6ZT98 887 aa12.92□□□□□ -0.34
MCF2L-223ENST00000473345 HACL1Q9UJ83 578 aa12.92□□□□□ -0.34
MCF2L-223ENST00000473345 IQCA1LA6NCM1 817 aa12.91□□□□□ -0.34
MCF2L-223ENST00000473345 HSPA8P11142 646 aaKnown RBP12.91□□□□□ -0.34
MCF2L-223ENST00000473345 PPP2R1AP30153 589 aa12.91□□□□□ -0.34
MCF2L-223ENST00000473345 SOGA3Q5TF21 947 aa12.91□□□□□ -0.34
MCF2L-223ENST00000473345 CNTROBQ8N137 903 aa12.91□□□□□ -0.34
MCF2L-223ENST00000473345 NGEFQ8N5V2 710 aa12.91□□□□□ -0.34
MCF2L-223ENST00000473345 THUMPD2Q9BTF0 503 aaKnown RBP12.91□□□□□ -0.34
MCF2L-223ENST00000473345 PRDM10Q9NQV6 1147 aa12.91□□□□□ -0.34
MCF2L-223ENST00000473345 RASSF10A6NK89 507 aa12.9□□□□□ -0.34
MCF2L-223ENST00000473345 EPS15P42566 896 aa12.9□□□□□ -0.34
MCF2L-223ENST00000473345 SCNN1DP51172 638 aa12.9□□□□□ -0.34
MCF2L-223ENST00000473345 TRAF5O00463 557 aa12.89□□□□□ -0.35
MCF2L-223ENST00000473345 U2AF1L5P0DN76 240 aaPredicted RBP12.89□□□□□ -0.35
MCF2L-223ENST00000473345 U2AF1Q01081 240 aaKnown RBP eCLIP12.89□□□□□ -0.35
MCF2L-223ENST00000473345 SUSD4Q5VX71 490 aa12.89□□□□□ -0.35
MCF2L-223ENST00000473345 TPTE2Q6XPS3 522 aa12.89□□□□□ -0.35
MCF2L-223ENST00000473345 LRP10Q7Z4F1 713 aa12.89□□□□□ -0.35
MCF2L-223ENST00000473345 CLEC11AQ9Y240 323 aa12.89□□□□□ -0.35
MCF2L-223ENST00000473345 LAMB4A4D0S4 1761 aa12.89□□□□□ -0.35
MCF2L-223ENST00000473345 THSD7BQ9C0I4 1608 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 GPTP24298 496 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 CTCFP49711 727 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-223ENST00000473345 CST9Q5W186 159 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 RTKN2Q8IZC4 609 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 PSMD1Q99460 953 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 ZNF652Q9Y2D9 606 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 KDM3BQ7LBC6 1761 aa12.88□□□□□ -0.35
MCF2L-223ENST00000473345 RIC1Q4ADV7 1423 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms